Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15e14
         (547 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0792 - 25275013-25275551,25275715-25275907                       29   3.2  
05_03_0182 + 9332280-9332363,9334212-9334286,9334390-9334437,933...    28   4.2  
03_06_0746 + 35961431-35961488,35963941-35964021,35964650-359647...    27   9.8  

>01_05_0792 - 25275013-25275551,25275715-25275907
          Length = 243

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +1

Query: 331 VTNKDNRKDEVEVREGVKGRNGVNEVREGDFRGNNSNGV-NEVREGEIGRKWRVSGV-XE 504
           V  +    +EV V  G  G  GV   R+G  +G +  GV ++   G   R  R SG   E
Sbjct: 42  VAAQTEEANEVAVVSG-GGGGGVQAARDGGGKGRDWQGVGDDCDYGLRQRGRRSSGCDEE 100

Query: 505 GDIRGNN 525
           G++RG+N
Sbjct: 101 GEVRGSN 107


>05_03_0182 +
           9332280-9332363,9334212-9334286,9334390-9334437,
           9334513-9334596,9334905-9334966,9335109-9335206,
           9335281-9335390
          Length = 186

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +1

Query: 352 KDEVEVREGVK--GRNGVNEVREGDFRGNNS 438
           K EVE RE +K  G     E+ EGDF G N+
Sbjct: 69  KKEVEKREVLKRQGHGEYREITEGDFLGENA 99


>03_06_0746 +
           35961431-35961488,35963941-35964021,35964650-35964713,
           35965538-35966216
          Length = 293

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +1

Query: 355 DEVEVREGVKGRNGVNEVREGDFRGNNSNGVNEVREGEIGRKWRVSGVXEGD 510
           D+V   E   G    +E  +GD   +   GV   R    G +WR  G  EG+
Sbjct: 230 DDVLSAEIGNGAEETDEPGDGDLAASAEQGVAARRWYGDGERWRRGGFREGE 281


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,788,818
Number of Sequences: 37544
Number of extensions: 198828
Number of successful extensions: 552
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)