Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15e14
         (547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022974-2|AAC48038.1|  344|Caenorhabditis elegans Seven tm rece...    31   0.72 
AL031633-19|CAA21031.1|  710|Caenorhabditis elegans Hypothetical...    29   2.9  
Z73976-2|CAA98285.1|  360|Caenorhabditis elegans Hypothetical pr...    28   3.8  
AC024750-7|AAF60436.2|  341|Caenorhabditis elegans Seven tm rece...    28   5.0  
AC024750-6|AAF60442.2|  341|Caenorhabditis elegans Seven tm rece...    28   5.0  

>AF022974-2|AAC48038.1|  344|Caenorhabditis elegans Seven tm
           receptor protein 209 protein.
          Length = 344

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = -1

Query: 82  FYTIIQFYLYIFYKTIT 32
           + T IQFY+Y+F+KTIT
Sbjct: 309 YRTAIQFYIYLFFKTIT 325


>AL031633-19|CAA21031.1|  710|Caenorhabditis elegans Hypothetical
           protein Y39A1A.22 protein.
          Length = 710

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 13/79 (16%)
 Frame = -2

Query: 354 FTIIFICYLCYCSPFHYLISLVF-----QPSFTTFSMFFNWFYF-----IKFVTNWLL-- 211
           F ++  CY C+ SPFH++    F       S TT  + F +F       + +   W+   
Sbjct: 368 FWLLKHCYKCFTSPFHFVTFTDFWLGDQMNSLTTAFLDFQYFVCFYATEVDYSNGWIEVK 427

Query: 210 -INSGLGP*PVGRLNLRIG 157
            INS  G  P G + L  G
Sbjct: 428 GINSTTGSVPWGSVELSNG 446


>Z73976-2|CAA98285.1|  360|Caenorhabditis elegans Hypothetical
           protein T07C12.6 protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 144 MRGYLKTQLLHYNYIADSFNTFTPLYNFIFIFFIKLLH 31
           ++ YLK QL HYN+I  S   F   Y  I    I +L+
Sbjct: 51  LKVYLKIQLFHYNFIILSIPMFGLWYEAIIGKMIVMLY 88


>AC024750-7|AAF60436.2|  341|Caenorhabditis elegans Seven tm
           receptor protein 174 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 333 YLCYCSPFHYLISLVFQPSFTTF-SMFF 253
           Y C CS F  ++ ++ QP+  T+ S FF
Sbjct: 50  YFCCCSIFFSIVDVIVQPNIQTYQSSFF 77


>AC024750-6|AAF60442.2|  341|Caenorhabditis elegans Seven tm
           receptor protein 175 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 333 YLCYCSPFHYLISLVFQPSFTTF-SMFF 253
           Y C CS F  ++ ++ QP+  T+ S FF
Sbjct: 50  YFCCCSIFFSIVDVIVQPNIQTYQSSFF 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,870,481
Number of Sequences: 27780
Number of extensions: 195667
Number of successful extensions: 661
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)