Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte15e13
(602 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 268 4e-73
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 142 4e-35
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 134 9e-33
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 132 3e-32
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 131 7e-32
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 116 2e-27
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 116 3e-27
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 115 6e-27
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 108 5e-25
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 105 4e-24
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 85 1e-17
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 83 2e-17
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 77 3e-15
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 51 1e-07
SPAC23G3.09 |taf4||transcription factor TFIID complex subunit Ta... 28 1.2
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 27 1.6
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 27 2.8
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 26 3.7
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 26 3.7
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S... 25 6.4
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 25 8.5
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 268 bits (657), Expect = 4e-73
Identities = 120/140 (85%), Positives = 127/140 (90%)
Frame = +1
Query: 73 MALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDY 252
MALKRINREL DLG+DPP+ CSAGP G+DLFHWQATIMGP DSPY GGVFFL+IHFPTDY
Sbjct: 1 MALKRINRELADLGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDY 60
Query: 253 PFKPPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDPLV 432
PFKPPKV FTTRIYHPNINSNGSICLDILR QWSPALTISKVLLSICSLL DPNPDDPLV
Sbjct: 61 PFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLV 120
Query: 433 PEIARIYKTDREKYNELARK 492
PEIA +YKTDR +Y AR+
Sbjct: 121 PEIAHVYKTDRSRYELSARE 140
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 142 bits (344), Expect = 4e-35
Identities = 64/142 (45%), Positives = 89/142 (62%), Gaps = 1/142 (0%)
Frame = +1
Query: 67 SQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPT 246
S + +R+ +E DL P ++LFHW T +GP DS Y GG F ++ FP
Sbjct: 5 SPSSSRRLTKEYSDLREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSLKFPL 64
Query: 247 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRAQ-WSPALTISKVLLSICSLLCDPNPDD 423
DYPF+PP + FTTRIYHPN +S G++CL IL+ Q + P++ + VL I LL +PNPDD
Sbjct: 65 DYPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDD 124
Query: 424 PLVPEIARIYKTDREKYNELAR 489
PLV IA Y+ DR ++++AR
Sbjct: 125 PLVASIAEQYRNDRPSFDKIAR 146
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 134 bits (324), Expect = 9e-33
Identities = 66/141 (46%), Positives = 91/141 (64%), Gaps = 1/141 (0%)
Frame = +1
Query: 73 MAL-KRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTD 249
MAL KRI +E++ L RDPP A P ++L +++ T+ GP S Y+GG F L + P +
Sbjct: 1 MALPKRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDE 60
Query: 250 YPFKPPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDPL 429
YP PP V F T+IYHPN++ G ICL L+ WSPAL I VLLSI +L+ PNPDDPL
Sbjct: 61 YPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPL 120
Query: 430 VPEIARIYKTDREKYNELARK 492
++A+I+K + + AR+
Sbjct: 121 DNDVAKIWKENEPQAIANARE 141
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 132 bits (320), Expect = 3e-32
Identities = 58/138 (42%), Positives = 88/138 (63%), Gaps = 1/138 (0%)
Frame = +1
Query: 82 KRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFK 261
+RI +EL D+ +D A +D+ H + GP +PY+GG F + I P DYPF+
Sbjct: 7 RRIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFR 66
Query: 262 PPKVAFTTRIYHPNINS-NGSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDPLVPE 438
PPK+ F T+IYHPN++S G+ICLDIL+ QWSP T+ L+S+ SLLC P P +P +
Sbjct: 67 PPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQ 126
Query: 439 IARIYKTDREKYNELARK 492
+A++Y + +++ AR+
Sbjct: 127 VAQVYLQNYQQFVRTARE 144
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 131 bits (317), Expect = 7e-32
Identities = 57/142 (40%), Positives = 90/142 (63%)
Frame = +1
Query: 67 SQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPT 246
S A +R+ R+ + + +DPPA SA P +++ W A I+GP D+P++ G F L + F
Sbjct: 2 STTARRRLMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDE 61
Query: 247 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDP 426
YP KPP V F + ++HPN+ +NG +CLDIL+ +WSP ++ +L SI SLL DPN P
Sbjct: 62 QYPNKPPLVKFVSTMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNNASP 121
Query: 427 LVPEIARIYKTDREKYNELARK 492
E A++++ ++++Y RK
Sbjct: 122 ANAEAAQLHRENKKEYVRRVRK 143
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 116 bits (280), Expect = 2e-27
Identities = 54/139 (38%), Positives = 83/139 (59%), Gaps = 1/139 (0%)
Frame = +1
Query: 82 KRINRELQDLGRDPPAQCSAGPHGE-DLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPF 258
KR+ EL L SA P + +L HW TI GP D+ Y+G F +++ FP +YP+
Sbjct: 31 KRLRSELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPY 90
Query: 259 KPPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDPLVPE 438
PP + FT+ ++HPN++ +G+ICLDIL+ +WS + +LLS+ SLL +PN PL +
Sbjct: 91 SPPTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQ 150
Query: 439 IARIYKTDREKYNELARKR 495
A ++ D +Y L +R
Sbjct: 151 AAELWSKDPIEYKRLLMQR 169
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 116 bits (279), Expect = 3e-27
Identities = 53/154 (34%), Positives = 90/154 (58%), Gaps = 14/154 (9%)
Frame = +1
Query: 73 MALKRINRELQDLGRDPPAQCSAGPHGED-LFHWQATIMGPVDSPYQGGVFFLTIHFPTD 249
MAL+R+ +E ++L + P +AGP ED F W I GP +P++GG++ T+ FP+D
Sbjct: 5 MALRRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSD 64
Query: 250 YPFKPPKVAFTTRIYHPNINSNGSICLDILRA-------------QWSPALTISKVLLSI 390
YP PP + F +HPN+ +G++C+ IL A +WSP ++ K+LLS+
Sbjct: 65 YPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSV 124
Query: 391 CSLLCDPNPDDPLVPEIARIYKTDREKYNELARK 492
S+L +PN + + ++++ DRE+Y + R+
Sbjct: 125 MSMLAEPNDESGANIDACKMWREDREEYCRVVRR 158
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 115 bits (276), Expect = 6e-27
Identities = 51/113 (45%), Positives = 73/113 (64%), Gaps = 2/113 (1%)
Frame = +1
Query: 157 DLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-SNGSICLD 333
D+FHW+A I GP ++PY+GG + L IH YP PP V F T+I HPNI+ +NG +C+D
Sbjct: 33 DMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYPISPPSVYFQTKIVHPNISWTNGEVCMD 92
Query: 334 ILRAQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKT-DREKYNELAR 489
IL+ WSPA ++ L+I SLL + + PL + A++ +T D+ YN L R
Sbjct: 93 ILKTHWSPAWSLQSACLAIISLLSNYDASSPLNVDAAKLLRTGDKTAYNSLVR 145
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 108 bits (260), Expect = 5e-25
Identities = 53/151 (35%), Positives = 84/151 (55%), Gaps = 7/151 (4%)
Frame = +1
Query: 67 SQMALKRINRELQDLGRDPP-----AQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLT 231
S + R+ E + RD P C + G DL +W+ I G + ++GG++ LT
Sbjct: 2 SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLT 61
Query: 232 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRAQ--WSPALTISKVLLSICSLLC 405
+ FP +YP +PPK FT ++HPN+ +G++CL IL + W PA+TI ++LL I LL
Sbjct: 62 MAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLD 121
Query: 406 DPNPDDPLVPEIARIYKTDREKYNELARKRS 498
DPN P E ++K D+ +Y + R ++
Sbjct: 122 DPNIASPAQTEAYTMFKKDKVEYEKRVRAQA 152
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 105 bits (253), Expect = 4e-24
Identities = 47/149 (31%), Positives = 85/149 (57%), Gaps = 14/149 (9%)
Frame = +1
Query: 88 INRELQDLGRDPPAQCSAG-PHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKP 264
+ ++L+++ ++PP S G + +F W+ I+GP D+ Y+GG F T+ FP DYP P
Sbjct: 10 LRKQLKEIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMP 69
Query: 265 PKVAFTTRIYHPNINSNGSICLDILR-------------AQWSPALTISKVLLSICSLLC 405
PK+ FTT I+HPN++ NG +C+ IL +W P + +L+S+ S+L
Sbjct: 70 PKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILISVISMLS 129
Query: 406 DPNPDDPLVPEIARIYKTDREKYNELARK 492
PN + P + A+ ++ + +++ + R+
Sbjct: 130 SPNDESPANIDAAKEFRENPQEFKKRVRR 158
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 84.6 bits (200), Expect = 1e-17
Identities = 38/100 (38%), Positives = 55/100 (55%)
Frame = +1
Query: 190 PVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRAQWSPALTI 369
P + Y+GG F I +YP PPKV +IYHPNI+ G++CL+ILR W+P L +
Sbjct: 60 PDEGYYKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWNPVLNL 119
Query: 370 SKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAR 489
+ +L+ + L PN +DPL E A D + + R
Sbjct: 120 NSILVGLQFLFLSPNAEDPLNKEAAADLHKDPQGFASRVR 159
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 83.4 bits (197), Expect = 2e-17
Identities = 36/98 (36%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
Frame = +1
Query: 187 GPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRAQWSPAL 363
GP ++PY GG++ + + P++YP+K P + F RI+HPNI+ +GS+CLD++ WSP
Sbjct: 38 GPSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSPMF 97
Query: 364 TISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDREKY 474
+ + + + LL PN DPL E A + + Y
Sbjct: 98 DMINIFEVFLPQLLRYPNASDPLNGEAAALLLREPNTY 135
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 76.6 bits (180), Expect = 3e-15
Identities = 45/143 (31%), Positives = 70/143 (48%), Gaps = 6/143 (4%)
Frame = +1
Query: 67 SQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPT 246
S+ A KR+ +E L ++P A P E++ W I GP D+PY+GG + T+ FP
Sbjct: 3 SKGAYKRLMKEYLALQKNPVELVDAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFPP 62
Query: 247 DYPFKPPKVAFTTRIYHPNINSNGSICL---DILRAQWSPALTISKVLLSICSLL-CDPN 414
DYPFKPP + T +N +CL D W+P+ +S +L+ + S + D
Sbjct: 63 DYPFKPPAIRMITP--SGRFQTNTRLCLSFSDFHPKSWNPSWMVSTILVGLVSFMTSDEI 120
Query: 415 PDDPLV--PEIARIYKTDREKYN 477
+V R Y D +++N
Sbjct: 121 TTGGIVTSESTRRTYAKDTKRFN 143
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 51.2 bits (117), Expect = 1e-07
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Frame = +1
Query: 127 AQCSAGPHGED---LFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYH 297
+ CS G D L W ATI+GP S ++ ++ L IH +YP PP V F +RI
Sbjct: 24 SSCSYGLTNADDITLSDWNATILGPAHSVHENRIYSLKIHCDANYPDAPPIVTFVSRINL 83
Query: 298 PNIN-SNGSI---CLDILRAQWSPALTISKVLLSI 390
P ++ G + +D LR W ++ VLL +
Sbjct: 84 PGVDGETGKVNPHKIDCLR-HWKREYSMETVLLDL 117
>SPAC23G3.09 |taf4||transcription factor TFIID complex subunit
Taf4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 27.9 bits (59), Expect = 1.2
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +1
Query: 64 NSQMALKRINRELQDLGRDPPAQCSAG---PHGEDLFHWQATIMGPVDSPYQGGVF 222
+S A K I+ + Q+ + A AG P G + W AT M P+ +P GG F
Sbjct: 246 SSSAAAKNISEDAQNRMTNATASIMAGSALPSGGKKYSWMATDMTPM-TPAVGGGF 300
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = +1
Query: 355 PALTISKVLLSICSLLCDPNPDD---PLVPEIARIYKTD 462
PA++I LL++ + NP D P+V +I RI+K+D
Sbjct: 344 PAVSIDGTLLNVGDWVLIRNPADSSKPIVSQIYRIWKSD 382
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = +2
Query: 128 HNVRQAHTVKIC---SIGKPQLWAQLTVLIKEEFSSLPYISLQTTLSNHQ 268
H V +T C ++ P LWA L + F Y L+T N+Q
Sbjct: 406 HTVFSGYTTVWCPQNAVFVPGLWANLATRYRASFMLTDYAGLKTIAYNYQ 455
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 244 TDYPFKPPKVAFTTRIYHPNINSN 315
TD FKP + T +++P+I +N
Sbjct: 113 TDKKFKPNDTSITANVFNPSIQNN 136
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 349 WSPALTISKVLLSICSLLCDPNPDDPLVPEI 441
+SPA I KVL + L DPN + P++P+I
Sbjct: 291 FSPAPFIQKVLSRL--LPSDPNVEMPMIPQI 319
>SPBC1773.03c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/51 (29%), Positives = 20/51 (39%)
Frame = +1
Query: 142 GPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIY 294
G HG LF M P PY+G T H + ++ + TT Y
Sbjct: 146 GYHGNTLFALSVGGMKPRKQPYEGVFSHTTSHVSPCFEYRYKENGETTEEY 196
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2
Query: 151 RVGLPNIVLVDPCPDL 104
RV L +IV ++PCPD+
Sbjct: 113 RVRLGDIVTINPCPDI 128
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,698,993
Number of Sequences: 5004
Number of extensions: 61199
Number of successful extensions: 193
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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