Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte15e07
(358 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0612 + 5378190-5378251,5378926-5379244,5379381-5379671,538... 29 1.4
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 28 1.9
03_02_0102 + 5637469-5639064 27 3.3
07_03_1106 + 24017601-24019955 27 4.3
03_06_0033 - 31186076-31186189,31186274-31186396,31186524-311867... 27 4.3
03_05_0213 - 22037268-22039496 27 4.3
01_01_0145 + 1327172-1327362,1327491-1328169 27 4.3
11_03_0136 + 10591247-10591352,10591463-10591712,10595401-105955... 27 5.7
05_03_0662 + 16732965-16733037,16733310-16733413,16734468-167348... 26 7.6
04_04_1658 - 35119623-35119754,35121033-35121121,35121205-351215... 26 7.6
01_05_0680 - 24238840-24241242 26 7.6
>08_01_0612 +
5378190-5378251,5378926-5379244,5379381-5379671,
5380520-5380768,5380843-5380967,5381487-5381585,
5381668-5382352
Length = 609
Score = 28.7 bits (61), Expect = 1.4
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 229 KEALQCFEEPANDGFFDQQVSYQILLDLLYCHEMFDEMYRVF 354
+EAL FEE + G + SY IL+D + +E + VF
Sbjct: 334 EEALAVFEEMLDAGVRPTRKSYNILIDAFAISGLVEEAHTVF 375
>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 28.3 bits (60), Expect = 1.9
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Frame = +1
Query: 166 RFGSFV-FGPVVMRMFHFLDAPKEALQCFEEPAND---GFFDQQ----VSYQILLDLLYC 321
RFG+ + PV + +F L A AND FD + +SY L+ +YC
Sbjct: 1405 RFGALADYNPVYITLFRELSQQGGARLFLPTGANDVVIPVFDDEPTSIISYA-LVSPMYC 1463
Query: 322 HEMFDE 339
H+M DE
Sbjct: 1464 HQMLDE 1469
>03_02_0102 + 5637469-5639064
Length = 531
Score = 27.5 bits (58), Expect = 3.3
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +1
Query: 196 VMRMFHFLDAPKEALQCFEEPANDGFFDQQVSYQILLDLLYCHEMFDEMYRVF 354
++R+ H +AL+ + + N+GF + +L DLL DE R F
Sbjct: 397 IVRLCHRHGRVAQALELWSDMVNNGFGSFTLVSDVLFDLLCDEGKLDEAERCF 449
>07_03_1106 + 24017601-24019955
Length = 784
Score = 27.1 bits (57), Expect = 4.3
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1
Query: 229 KEALQCFEEPANDGFFDQQVSYQILLDLLYCHEMFDEMYRV 351
KEA Q F+E GF +V++ LLD+ DE V
Sbjct: 260 KEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEV 300
>03_06_0033 -
31186076-31186189,31186274-31186396,31186524-31186718,
31186805-31186930,31187024-31187186,31187270-31187405,
31187557-31187916,31188026-31188124,31188222-31188489
Length = 527
Score = 27.1 bits (57), Expect = 4.3
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +1
Query: 25 RMNDFVSDSKNMIFTEDLKNMVHLAEPSDLQL 120
R+ F DS N+ +TE LK + L P DLQL
Sbjct: 393 RVKGFPVDS-NVPYTERLKILAGLVNPDDLQL 423
>03_05_0213 - 22037268-22039496
Length = 742
Score = 27.1 bits (57), Expect = 4.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 226 PKEALQCFEEPANDGFFDQQVSYQILLDLL 315
P AL+ FEE N G +V+Y L+D L
Sbjct: 407 PHLALRLFEEMKNSGCTPDEVTYNTLIDNL 436
>01_01_0145 + 1327172-1327362,1327491-1328169
Length = 289
Score = 27.1 bits (57), Expect = 4.3
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 171 WFIRVWPSCNEDVSFLRC 224
W R PSCNE + +RC
Sbjct: 79 WMDRACPSCNEPIGDIRC 96
>11_03_0136 +
10591247-10591352,10591463-10591712,10595401-10595578,
10596741-10597136
Length = 309
Score = 26.6 bits (56), Expect = 5.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 172 GSFVFGPVVMRMFHFLDAPKEALQCFEEPANDG 270
G++ G +R H++D P+ LQ EEP G
Sbjct: 41 GAWRNGDSGVRYEHYVDEPRSVLQVIEEPFVQG 73
>05_03_0662 +
16732965-16733037,16733310-16733413,16734468-16734861,
16736291-16736901,16739238-16739289,16739771-16739826,
16739962-16740190,16740980-16741212,16741480-16741740
Length = 670
Score = 26.2 bits (55), Expect = 7.6
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 229 KEALQCFEEPANDGF 273
K ALQC EE A+DGF
Sbjct: 467 KMALQCVEEVAHDGF 481
>04_04_1658 -
35119623-35119754,35121033-35121121,35121205-35121599,
35122009-35122091,35122163-35124184,35124859-35124927,
35125050-35125130,35125215-35125308,35125435-35125499,
35125961-35126038,35126115-35126360
Length = 1117
Score = 26.2 bits (55), Expect = 7.6
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 229 KEALQCFEEPANDGFFDQQVSYQILLDLLYCHEMFDEMYRVF 354
+EA+ FEE +G +V+Y LL + DE R F
Sbjct: 613 REAIDLFEEMQEEGVEADEVAYLALLSACSHSGLVDECRRYF 654
>01_05_0680 - 24238840-24241242
Length = 800
Score = 26.2 bits (55), Expect = 7.6
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +1
Query: 175 SFVFGPVVMRMFHFLDAPKEALQCFEEPANDGFFDQQVSYQILL 306
S V +M + ++AL FEE DG V+Y +L+
Sbjct: 281 SVVLATTLMHGYCLQREVRKALDIFEETLRDGLVPTDVTYTVLI 324
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,311,156
Number of Sequences: 37544
Number of extensions: 138235
Number of successful extensions: 355
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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