Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte15e06
(695 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz... 28 1.1
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 27 1.9
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 27 2.6
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 27 3.4
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po... 26 4.5
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 26 4.5
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei... 26 5.9
SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc... 26 5.9
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 25 7.8
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 25 7.8
>SPCC794.08 |||HEAT repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 798
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 202 LLYYVASLS*AVRNVAHYTASMVETAFY 119
L YY AS S +R VAH+ S V ++Y
Sbjct: 35 LSYYAASNSSKLRKVAHFLGSRVRHSYY 62
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 207 RRCRCHSVFRGCSSVFLHTSHPRYTLSNQRTLWVTLLECK*TPV 338
RR + +V S ++H YT+S + W+ +L CK PV
Sbjct: 655 RRGKVITVLNNLGSYYIHF---HYTVSAEEHKWMDVLSCKSVPV 695
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/35 (31%), Positives = 24/35 (68%)
Frame = +2
Query: 350 VLGIHFISNHILIRQKALFLIDTILYRIVNPSNHL 454
++GI F+S +I + + F +++I++RI P N++
Sbjct: 887 IIGIDFMS---VISRGSQFKVESIMFRIAKPENYI 918
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +1
Query: 34 PIHNITDNKNGLIN*YDKINTNASVQSNNKMQFQPLMPCNAPHFAPPSSNLPHN 195
P I+D+ N N D + S + K +PL +P + PSS PH+
Sbjct: 23 PKIKISDSPNRHHNLVDAFMQSPSYSTQPKSAVEPLGLSFSPGYISPSSQSPHH 76
>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 199 IGEGDVVAIVSSGGVLQYFFTPVTHGIHCPTNAPYGL 309
I ++ +V S + Y FT + G +C +N YGL
Sbjct: 297 IAVANICMLVFSIVTIIYLFTTIVVGFYCISNFGYGL 333
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 646 LFF*LHSYKQSRNDIHCWLNLAFP 575
L+F LHS RN +H WL FP
Sbjct: 242 LYFNLHSICD-RNTVHMWLQWIFP 264
>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
Vps41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 886
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -3
Query: 294 VGWTVYTVGDWCEEILKNTP*RHYGNDIAFPYYIMWQV*ARRCEMW 157
+G TVY+ ++ + + + P + ND FPY + WQ +R W
Sbjct: 187 LGITVYST-EFGKVLGRLEPPKRLPNDEIFPYQLFWQSESRLVIGW 231
>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +1
Query: 97 NASVQSNNKMQFQPLMPCNAPHFAPPSSNLP-HNIIGEGDVVAIVSSGGVLQYFFTPVTH 273
+ V + Q L N P F P + + H + + D+V S + ++P+TH
Sbjct: 142 SVGVSNYGVKHLQELYASN-PKFYPCVNQIELHPFLSQDDIVKYCQSHDIAIEAYSPLTH 200
Query: 274 GI 279
GI
Sbjct: 201 GI 202
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 202 LLYYVASLS*AVRNVAHYTASMVETAFYCY 113
LLY V +LS A+ YT + T+F+ Y
Sbjct: 9 LLYEVTALSTAIHVTKSYTHTRTGTSFFMY 38
>SPAC3A11.05c |kms1||meiotic spindle pole body protein
Kms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 316 NKVTHKVRWLDSVYRG*LV*RNTEEHPLKTL 224
N++TH++ DS Y V N++ + +KTL
Sbjct: 227 NELTHQLNMADSKYNESKVANNSQNNQIKTL 257
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,069,278
Number of Sequences: 5004
Number of extensions: 69127
Number of successful extensions: 168
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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