Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15e06
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0451 + 5845249-5846133,5846220-5846509,5855590-5856060,585...    31   0.66 
04_04_1535 + 34205426-34205593,34205697-34206869                       30   2.0  
02_05_0741 + 31408615-31409130                                         30   2.0  
12_01_0031 - 264610-265986                                             29   3.5  
03_04_0034 + 16679624-16679940,16679980-16680199,16680319-166806...    28   8.1  

>04_01_0451 +
           5845249-5846133,5846220-5846509,5855590-5856060,
           5856898-5857063,5857100-5857498,5858031-5858075
          Length = 751

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = +1

Query: 280 HCPTNAPYGLPYWNANKPLWFVRSIGDPFHIQPYPNSPEGVIFNRYNIISDSQPVQPFDL 459
           HC   A   +  WN  K +WFV+   +  H     N         + ++SDS+  Q  +L
Sbjct: 455 HCGCLAKLEIE-WNEEKGVWFVKEFNNQ-HTHELANPDHVAFLGVHRVVSDSKKAQAVEL 512

Query: 460 K 462
           +
Sbjct: 513 R 513


>04_04_1535 + 34205426-34205593,34205697-34206869
          Length = 446

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 130 FQPLMPCNAPHFAPPSSNLPHNIIGE 207
           F P +PC+ P F PP++ LP  +  E
Sbjct: 411 FVPHIPCDLPGFRPPAAALPSAVAAE 436


>02_05_0741 + 31408615-31409130
          Length = 171

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +1

Query: 139 LMPCNAPHFAPPS-SNLPHNIIGEGD 213
           L+PC + H + P+ SNLP  +IGE D
Sbjct: 107 LLPCRSRHLSTPTHSNLPPAVIGEVD 132


>12_01_0031 - 264610-265986
          Length = 458

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 4/122 (3%)
 Frame = +1

Query: 214 VVAIVSSGGVLQYFFTPVTHGIHCPTNAPYGLPYWNANKPLW--FVRSIGDPFHIQPYPN 387
           +VA+    G+  ++   VT      T+A   L    A  P W  +  ++     + P+  
Sbjct: 24  LVALQGFPGLALFYAGAVTRKCAL-TSAFMALYAMAATMPCWALWAHNMAFGHRLLPFVG 82

Query: 388 SPEGVIFNRYNIISDSQPVQPFDLKFHNDRWTSTTDLHYFYPSIRQ--YNWFPSGLSKGS 561
            P   +   Y +   +Q + PF L  H++    T  +   YPS     + W  +G++ G 
Sbjct: 83  RPAPALAQHYML---TQALLPFTLHLHSNGEVETAAVAPLYPSASMVFFQWASAGVTVGL 139

Query: 562 AA 567
            A
Sbjct: 140 VA 141


>03_04_0034 +
           16679624-16679940,16679980-16680199,16680319-16680624,
           16680703-16681044,16681066-16681257,16681533-16681684,
           16681803-16681974,16682017-16682338,16682414-16682862
          Length = 823

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 259 TPVTHGI-HCPTNAPYGLPYWNANKPLWFVRSIGDPFHIQPYPNSPE 396
           T  TH   H PT   Y +     N+P +     G  +H+Q Y ++PE
Sbjct: 663 TTYTHVFPHSPTGKYYLVDSGYPNRPGYLAPYKGTKYHLQEYRDAPE 709


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,027,257
Number of Sequences: 37544
Number of extensions: 419242
Number of successful extensions: 973
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)