Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15e06
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23147-4|AAC46689.1|  464|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AF106575-5|AAC78171.1|  421|Caenorhabditis elegans Hypothetical ...    28   7.3  
AF039044-8|AAG24129.1|  717|Caenorhabditis elegans Nuclear hormo...    28   7.3  
AF016448-4|AAY86192.1|   91|Caenorhabditis elegans Hypothetical ...    28   7.3  
AC006722-5|AAK68410.3|  703|Caenorhabditis elegans Hypothetical ...    28   7.3  
AC006645-10|AAF39849.1|  746|Caenorhabditis elegans Hypothetical...    28   7.3  

>U23147-4|AAC46689.1|  464|Caenorhabditis elegans Hypothetical
           protein C18H9.5 protein.
          Length = 464

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 214 VVAIVSSGGVLQYFFTPVTHGIHCPTNA 297
           ++A++S    +  F  P+  G+ CPTN+
Sbjct: 397 IMAVISMSSWVSAFILPIVIGVICPTNS 424


>AF106575-5|AAC78171.1|  421|Caenorhabditis elegans Hypothetical
           protein K04F1.12 protein.
          Length = 421

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 547 LSKGSAAVQVEMPSLTNNVCHYEIVCNCGVKRTKLN 654
           +S      ++ MP+LTN  C  EI  N  VK  KLN
Sbjct: 161 ISLNDKMTEIGMPNLTNVSCRVEITAN--VKLLKLN 194


>AF039044-8|AAG24129.1|  717|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 83 protein.
          Length = 717

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
 Frame = +1

Query: 157 PHFAP---PSSNLPHNIIGEGDVVAIVS-SGGVLQ 249
           PH  P   PSS+LPHN IG    V +   +G VLQ
Sbjct: 238 PHRKPSRGPSSSLPHNSIGSRSPVELGKLAGNVLQ 272


>AF016448-4|AAY86192.1|   91|Caenorhabditis elegans Hypothetical
           protein F41E6.15 protein.
          Length = 91

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +3

Query: 255 LHTSHPRYTLSNQRTLWVTLLECK*TPVVRTQYWGSISYPTIS*FARRRYF*SIQYYI 428
           L  S P  ++   + + +T+L C   P    QY+ ++ YP  S +    Y+    YY+
Sbjct: 4   LQKSFPTRSIPKYQLILLTVLACTVIPKAEAQYY-NLYYPYYSYYPYSYYYYYPSYYV 60


>AC006722-5|AAK68410.3|  703|Caenorhabditis elegans Hypothetical
           protein Y19D10A.10 protein.
          Length = 703

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 217 VAIVSSGGVLQYFFTPVTHGIHCPTNAP 300
           +A++S    L  F  PV  GI CP N P
Sbjct: 633 IAVISFTTYLVQFLAPVIVGIICPDNTP 660


>AC006645-10|AAF39849.1|  746|Caenorhabditis elegans Hypothetical
           protein F56A4.11 protein.
          Length = 746

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 217 VAIVSSGGVLQYFFTPVTHGIHCPTNAP 300
           +A++S    L  F  PV  GI CP N P
Sbjct: 676 IAVISFTTYLVQFLAPVIVGIICPDNTP 703


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,009,724
Number of Sequences: 27780
Number of extensions: 390367
Number of successful extensions: 1113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)