Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte15d24
(629 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 28 0.97
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p... 28 0.97
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc... 27 3.0
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 26 3.9
SPCC576.19c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 5.2
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr... 25 6.8
SPAC23H3.07c |mrp2||mitochondrial ribosomal protein subunit S14|... 25 6.8
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|... 25 9.0
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 25 9.0
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|... 25 9.0
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 28.3 bits (60), Expect = 0.97
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2
Query: 323 PPPKNYDHIEIPERQRL 373
PPP+N DH+++PE +L
Sbjct: 4076 PPPENEDHLDLPEDLKL 4092
>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 509
Score = 28.3 bits (60), Expect = 0.97
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -3
Query: 444 YLSLFCILGGFKFGGYCGTLSYTR 373
Y + FC GG FGGY G Y R
Sbjct: 448 YNTYFCFAGGAGFGGYGGHGGYVR 471
>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 359 ERQRLRVYDKVPQYPPNLKPPKMQKRLRYMRGPEEVHTTLQL 484
ER+ L Y P Y P+++PPK +K+ +GP T++L
Sbjct: 3 ERKVLNKYIP-PDYDPSIRPPKKKKK---FQGPNGGKLTVRL 40
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 26.2 bits (55), Expect = 3.9
Identities = 22/72 (30%), Positives = 27/72 (37%), Gaps = 7/72 (9%)
Frame = -3
Query: 576 MSNFLATTKRAISKCSCFILPPPVARTPYCFNCNVVWTSSGPLMYLSL-------FCILG 418
M +TTK C L + R +CF V S + LSL F
Sbjct: 582 MGQCFSTTKEINRFCVDISLQDDIVRNNHCFTDGVGMASLSVIRRLSLEVKNHDMFPSAF 641
Query: 417 GFKFGGYCGTLS 382
F+ GGY G LS
Sbjct: 642 QFRMGGYKGVLS 653
>SPCC576.19c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 119
Score = 25.8 bits (54), Expect = 5.2
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 206 FLFISTLL*KMFYRPFRSCFGLLQAEKAQLTLVAGLKYFP 325
FL+IS L Y PFRS LL ++ + V + P
Sbjct: 22 FLYISLELFNNMYSPFRSSSVLLSGAQSDIPKVGKCLFLP 61
>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 454
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -3
Query: 606 SILQMANIRFMSNFLATTKRAISKCSCFILPPPVARTPYCFNC 478
++L+MA + +F AISK C ++PP + RT C
Sbjct: 193 ALLEMAITNYAMDF------AISKGWCPVIPPTIVRTDIALAC 229
>SPAC23H3.07c |mrp2||mitochondrial ribosomal protein subunit
S14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 338 YDHIEIPERQRLRVYDKVPQYPPNLKPPKMQKR 436
Y + E+P R RL ++ P N P K++ R
Sbjct: 35 YRNPELPLRVRLEAKKRIEALPTNAHPTKIKNR 67
>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 272
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +2
Query: 326 PPKNYDHIEIPERQRLRVY--DKVPQYP 403
PP +H+ +P L Y D +P +P
Sbjct: 179 PPSREEHVSVPRESSLFTYEDDPLPSFP 206
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 335 NYDHIEIPERQRLRVYDKVPQYPPNLK 415
N + + IP ++L +D++P PPN+K
Sbjct: 347 NIEMLNIPVPKQL--FDQIPNLPPNVK 371
>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 492
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = +2
Query: 497 VRATGGGRMKHEHFEMARLVVAR----KLDMKRMFAIWRI 604
+ A G R+KH H++ VV L M +F++W +
Sbjct: 281 IDAINGSRLKHSHYKQYHYVVQSLHLWLLIMGEIFSLWAL 320
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,471,527
Number of Sequences: 5004
Number of extensions: 50946
Number of successful extensions: 143
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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