Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte15d22
(534 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 104 1e-23
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 28 1.0
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 27 1.3
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo... 27 2.3
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 27 2.3
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 26 3.1
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 26 4.1
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 25 7.1
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 25 9.4
SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos... 25 9.4
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 104 bits (249), Expect = 1e-23
Identities = 50/140 (35%), Positives = 84/140 (60%), Gaps = 2/140 (1%)
Frame = +2
Query: 101 NKRNSGLADKVHSNRKAEINK--KKINPFEVHVNREKIKVLGKKSKHDKGLPGVSRAKAV 274
NK++ + + H +R+A++ K N F+ + K V G++ K +G PGVSR
Sbjct: 26 NKKSRTRSTESHEDRQAKVQKIQSDFNLFDRQFTKRKFDVGGRRVKGTEGKPGVSRGVGE 85
Query: 275 QKRKETLGTEMKLMNKTNTFIDRRIGEKNNQLSAEDKMIARFAAERVKQHNKKSIYNLAD 454
+ R+ T+G E+K N++ IDRR GE N LS E+KM+ RF+ E+ ++ +K+ +YNL
Sbjct: 86 ELRRRTIGAELKKRNRSGAIIDRRFGENNPHLSVEEKMLERFSREQ-QRRSKRELYNLDA 144
Query: 455 DEILTHRGXTLEQIEKFDDP 514
+++LTH L I+ F++P
Sbjct: 145 EDVLTHGNRPLSDIDSFEEP 164
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 27.9 bits (59), Expect = 1.0
Identities = 20/109 (18%), Positives = 49/109 (44%)
Frame = +2
Query: 110 NSGLADKVHSNRKAEINKKKINPFEVHVNREKIKVLGKKSKHDKGLPGVSRAKAVQKRKE 289
+ +AD+ + N K+ I + + + K+KV GKK + +A ++R E
Sbjct: 75 SDNIADEENDNHKSTITYGTLIVGDDKFSNGKLKVAGKKRGPTDVFGALKHLEAKKRRIE 134
Query: 290 TLGTEMKLMNKTNTFIDRRIGEKNNQLSAEDKMIARFAAERVKQHNKKS 436
++ E + + + R + + + +++ + + + R ++ KKS
Sbjct: 135 SMDEEKRRKIEESDKWHRVLLQAEGKKLKDNEQLLKKSIRRKEKEKKKS 183
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 27.5 bits (58), Expect = 1.3
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Frame = +2
Query: 314 MNKTNTFIDRRIGEKNNQLSAE-DKMIA-----RFAAERVKQHNKKSI--YNLADDEILT 469
+ K +F++ I E N + + DK + R++ + V K+S YN ++++ T
Sbjct: 809 LEKIESFLENSIAELQNSVREDFDKQTSSLAQLRYSIQNVAHAQKESEVKYNELNEQVKT 868
Query: 470 HRGXTLEQIEKFDDPRSDDE 529
G +EKF+D + +++
Sbjct: 869 LEGYVETVLEKFNDLKIENK 888
>SPAC1F7.08 |fio1||iron transport multicopper oxidase
Fio1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 622
Score = 26.6 bits (56), Expect = 2.3
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 244 TFIMLRFLP*NFNFFTIHMHLKW 176
+FI++RF+ N + IH H++W
Sbjct: 463 SFIVIRFIADNPGAWVIHCHIEW 485
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 26.6 bits (56), Expect = 2.3
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 80 IKMAKVKNKRNSGLADKVHSNRKAEINKKKINPFEVHVNR 199
I+ K N NS LADK+ R E +K +++ H+NR
Sbjct: 756 IEKNKEINVLNSELADKLAQIRHLESDKMELDKLVHHLNR 795
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 460 LIICQIVYTLFIVLFNSFSGKSRNHF 383
+IICQ +Y L + L F+G S H+
Sbjct: 1017 MIICQSMYQLAVTLVLHFAGNSIFHY 1042
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 4.1
Identities = 19/95 (20%), Positives = 46/95 (48%)
Frame = +2
Query: 95 VKNKRNSGLADKVHSNRKAEINKKKINPFEVHVNREKIKVLGKKSKHDKGLPGVSRAKAV 274
V+ + +S + V S + + +I E + E+++ G++ + ++ +P +
Sbjct: 324 VQQEASSSEEEAVKSLPETQRTTSRIETQEEEIKEEEME--GEEEEEEEEVPNYESENEL 381
Query: 275 QKRKETLGTEMKLMNKTNTFIDRRIGEKNNQLSAE 379
+ + L + + ++F+D + E+NN LSAE
Sbjct: 382 EDKVGDLSLSLGV---ASSFVDEMLRERNN-LSAE 412
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 25.0 bits (52), Expect = 7.1
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +2
Query: 377 EDKMIARFAAERVKQHNKKSIYNLADDEILTHRGXTLEQIEKFDDPRSDDE 529
ED R AERV ++NKK A H+ ++ +DD DE
Sbjct: 100 EDPEAERIKAERVAEYNKKK----AAKPKAVHKSLVTLDVKPWDDETPMDE 146
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +2
Query: 353 EKNNQLSAEDKMIARFAAERVKQHNKKSIYNLADD--EILTHRGXTLEQ 493
E NN+ A+D+ + E ++ ++ S +++ D EI+ G +EQ
Sbjct: 105 EMNNRDDADDEFLGFSGPENLEDVDESSAEDVSGDEAEIMNEEGQQIEQ 153
>SPBC947.13 |rba50||RNA polymerase II associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 24.6 bits (51), Expect = 9.4
Identities = 22/102 (21%), Positives = 43/102 (42%)
Frame = +2
Query: 197 REKIKVLGKKSKHDKGLPGVSRAKAVQKRKETLGTEMKLMNKTNTFIDRRIGEKNNQLSA 376
++ ++V +H +G P VSR ++ K + K++ K + K N
Sbjct: 21 KQLVEVKRSVQRHARGFPAVSRTLPKRESKSMSAYKEKMLRKNKE--SPGLEGKGN---L 75
Query: 377 EDKMIARFAAERVKQHNKKSIYNLADDEILTHRGXTLEQIEK 502
+D+ I R+++ N I ++ T R LE ++K
Sbjct: 76 DDQGIDEENRVRLERMNDLEIEGAQEEIRATIRDDLLEMLKK 117
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,978,220
Number of Sequences: 5004
Number of extensions: 37198
Number of successful extensions: 118
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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