Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15d18
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    27   1.8  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   2.3  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    27   3.1  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   4.1  
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual        25   9.4  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   9.4  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   9.4  
SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p...    25   9.4  

>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/54 (25%), Positives = 22/54 (40%)
 Frame = +3

Query: 264 SGQKQAESNTSQFLRTLSQVESKLSEQINYLTQVSTGQPHEGSGYASQKVLQMA 425
           SG K A+   +QFL  +      L  + NY    S     + SG    + + +A
Sbjct: 417 SGNKSAQEGQNQFLSMVESEAKNLMNKTNYSANQSQNGNSQNSGNPVSQAIDLA 470


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
 Frame = -3

Query: 423 PFAKPSVKHIQ--NLHVVVQL---KLESSNLFVHSTLIPLD*VFLKTVMCLIQLVFDQIF 259
           P    ++KH +  NL + V+L   K+ S + F + +L  L  V+LKT   LI+L  DQI 
Sbjct: 218 PLILSTIKHAEENNLDLSVRLLPSKVLSDSEF-YKSLSNLVNVWLKTTRSLIKLFHDQIS 276

Query: 258 LYSIQE 241
             +++E
Sbjct: 277 KTALEE 282


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -3

Query: 627 YYYC-FHSMCRLLFNVHTFN*FNIRYWCQMMSYC 529
           Y +C FHSM ++  ++H        +WC++   C
Sbjct: 163 YIFCNFHSMYQIKLSIHATYDSENGFWCRVCREC 196


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = -3

Query: 480  LSDDPIRSPMI*HVLNDAKPFAKPSVKHIQNLHVVVQLKLESSNLFVHSTLIPLD*VFLK 301
            L+DDP  SP   H +    P        +QNL +++   ++S   FVHS L   + ++LK
Sbjct: 935  LNDDPGLSPKWLHAIKKLLPLL------LQNLQLLMVNPIQSLCKFVHSFLDQHESMYLK 988


>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 426 WHRLEHVRSWVNELDRLKASHLATPRTATGSVPNGNMTSSGTST*Y 563
           W  +E+VR    +     A +   P+T    + NG +  SGTS  Y
Sbjct: 470 WQAVEYVRRTSQDEGIDYALNYTDPKTNDSFILNGLLVPSGTSITY 515


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 450 SWVNELDRLKASHLATPRTATGSVPNGNMTSSGTST 557
           S  N    L  S  +TP + +  VP    TSSG +T
Sbjct: 654 SGFNTTSGLPTSSASTPSSNSSIVPTSTFTSSGFNT 689


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 642 VFNNYYYYCFHSMCRL 595
           V N +Y YC+HS+ +L
Sbjct: 186 VVNGWYSYCYHSLNKL 201


>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 264

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = -3

Query: 357 SSNLFVHSTLIPLD*VFLKTV--MCLIQLVFDQIFLYSIQEVLELHIVDR 214
           SSN  V+S  +PL  VF+ ++  +C+  LV      Y++  + +LH++ R
Sbjct: 96  SSNK-VYSNEVPLLFVFVISISIVCIFDLVIFGCLQYNMVSMDDLHVMQR 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,554,862
Number of Sequences: 5004
Number of extensions: 49585
Number of successful extensions: 131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)