Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15d18
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23515-10|AAK21456.1|  188|Caenorhabditis elegans Mediator prote...    53   2e-07
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p...    34   0.100
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr...    34   0.100
J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy ch...    34   0.100
AL117193-1|CAB54981.1|  767|Caenorhabditis elegans Hypothetical ...    31   0.93 
Z83127-1|CAB05630.1|  160|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z75527-3|CAA99777.1|  428|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z49910-8|CAA90123.2|  408|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z34533-6|CAA84300.2|  371|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AY158690-1|AAN41642.1|  371|Caenorhabditis elegans choline kinas...    27   8.7  
AC084153-7|AAK84593.1|  451|Caenorhabditis elegans Hypothetical ...    27   8.7  

>U23515-10|AAK21456.1|  188|Caenorhabditis elegans Mediator protein
           11 protein.
          Length = 188

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
 Frame = +3

Query: 171 ERIQVLDEIEKDIITXXXXXXXXXXELSKEKS-GQKQAESNTSQFLRTLSQVESKLSEQI 347
           +RIQ +   EK I            +L KEK  G+ + E N + F + ++QVE++LS Q+
Sbjct: 12  DRIQAIVTTEKSIDEMMKCAREIIQDLGKEKQIGKNKMEDNANNFKKLITQVENELSAQM 71

Query: 348 NYLTQVSTGQPHEGSGYASQKVLQMAWHRLEHVRSWVNELDRLKASHLATPRTATGSVPN 527
            YL+ V  G  H+GS +   +   +A   L  + S + ++ R        P+T      +
Sbjct: 72  QYLSHVCVGSSHQGSTFGVLQNSLLAQSGLSSLHSELFQIVRYLDPTSDEPQTTEEDEED 131

Query: 528 GN 533
           G+
Sbjct: 132 GS 133


>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
            protein F11C3.3 protein.
          Length = 1963

 Score = 33.9 bits (74), Expect = 0.100
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
 Frame = +3

Query: 192  EIEKDIITXXXXXXXXXXELSKEKSGQKQAESNTSQFLRTLSQVESKLSEQINYLTQVST 371
            ++EKD             +L +E SG+   E    QF   L++++SK  EQ   L   ++
Sbjct: 1225 KVEKDKAQAVRDAEDLAAQLDQETSGKLNNEKLAKQFELQLTELQSKADEQSRQLQDFTS 1284

Query: 372  --GQPHEGSGYASQKVLQMAWHRLEHVRSWVNELDRLKA 482
              G+ H  +G   ++        LE   S VN+L RLK+
Sbjct: 1285 LKGRLHSENGDLVRQ--------LEDAESQVNQLTRLKS 1315


>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical protein
            F11C3.3 protein.
          Length = 1963

 Score = 33.9 bits (74), Expect = 0.100
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
 Frame = +3

Query: 192  EIEKDIITXXXXXXXXXXELSKEKSGQKQAESNTSQFLRTLSQVESKLSEQINYLTQVST 371
            ++EKD             +L +E SG+   E    QF   L++++SK  EQ   L   ++
Sbjct: 1225 KVEKDKAQAVRDAEDLAAQLDQETSGKLNNEKLAKQFELQLTELQSKADEQSRQLQDFTS 1284

Query: 372  --GQPHEGSGYASQKVLQMAWHRLEHVRSWVNELDRLKA 482
              G+ H  +G   ++        LE   S VN+L RLK+
Sbjct: 1285 LKGRLHSENGDLVRQ--------LEDAESQVNQLTRLKS 1315


>J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy chain
            protein.
          Length = 1966

 Score = 33.9 bits (74), Expect = 0.100
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
 Frame = +3

Query: 192  EIEKDIITXXXXXXXXXXELSKEKSGQKQAESNTSQFLRTLSQVESKLSEQINYLTQVST 371
            ++EKD             +L +E SG+   E    QF   L++++SK  EQ   L   ++
Sbjct: 1228 KVEKDKAQAVRDAEDLAAQLDQETSGKLNNEKLAKQFELQLTELQSKADEQSRQLQDFTS 1287

Query: 372  --GQPHEGSGYASQKVLQMAWHRLEHVRSWVNELDRLKA 482
              G+ H  +G   ++        LE   S VN+L RLK+
Sbjct: 1288 LKGRLHSENGDLVRQ--------LEDAESQVNQLTRLKS 1318


>AL117193-1|CAB54981.1|  767|Caenorhabditis elegans Hypothetical
           protein Y105C5A.1 protein.
          Length = 767

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -3

Query: 486 EKLSDDPIRSPMI*HVLNDAKPFAKPSVKHIQNLHVVVQLK 364
           E  SD P RSP+   V N  KP   PS K  +N   + Q+K
Sbjct: 193 EASSDAPARSPLKKKVANSVKPVVLPSRKSTRNKKDMNQIK 233


>Z83127-1|CAB05630.1|  160|Caenorhabditis elegans Hypothetical
           protein T23F6.1 protein.
          Length = 160

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -2

Query: 445 TCSKRCQAICKTFCEAYPEPSCGC 374
           TC K CQ +C   C      SCGC
Sbjct: 109 TCCKCCQPVCTNACTNGGGCSCGC 132


>Z75527-3|CAA99777.1|  428|Caenorhabditis elegans Hypothetical
           protein C15C8.3 protein.
          Length = 428

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 469 SNSFTHDLTCSKRCQAICKTFCEAYPEPSC 380
           SN +  D+TC+    A C ++C++ P  +C
Sbjct: 94  SNLWVPDITCAGGKDATCGSYCKSTPYDAC 123


>Z49910-8|CAA90123.2|  408|Caenorhabditis elegans Hypothetical
           protein F44G4.7 protein.
          Length = 408

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 4/118 (3%)
 Frame = +3

Query: 186 LDEIEKDIITXXXXXXXXXXELSKEKSGQKQAESNTSQFLRTLS-QVESKLSEQINYLTQ 362
           L++I+++ +           E  +E + +      T    R LS  ++   SE I  + Q
Sbjct: 103 LNDIDENEVLRPESAASTVMESERELTKKILNVPKTFAGFRELSVDLDQVSSEDIMNMLQ 162

Query: 363 VSTGQPHEGSGYASQKVLQMAWHRLEHVRSWVNELDRLKASHLAT---PRTATGSVPN 527
            S  Q H  SG+ S   +  +   +    +W N  D L A+ L +   P  A  S PN
Sbjct: 163 GSYSQDHHHSGFLSIATVLSSIRTIHPSDTWQNLFDWLIATGLDSDGYPELAPPSSPN 220


>Z34533-6|CAA84300.2|  371|Caenorhabditis elegans Hypothetical
           protein B0285.8 protein.
          Length = 371

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 305 KNTQSSGIKVE*TNKLLDSSFNWTTT*RFWICF 403
           KN   S   +E +N + +  F W  T  FW CF
Sbjct: 294 KNRVPSNRDLEVSNLICECQFFWPITQLFWACF 326


>AY158690-1|AAN41642.1|  371|Caenorhabditis elegans choline kinase
           CKB-1 protein.
          Length = 371

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 305 KNTQSSGIKVE*TNKLLDSSFNWTTT*RFWICF 403
           KN   S   +E +N + +  F W  T  FW CF
Sbjct: 294 KNRVPSNRDLEVSNLICECQFFWPITQLFWACF 326


>AC084153-7|AAK84593.1|  451|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.4 protein.
          Length = 451

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 513 GSVPNGNMTSSGTST*Y*IN*TYGH*IVTCTL 608
           G+ PN N++ SGT+  Y IN    H  + CT+
Sbjct: 92  GAEPNQNLSISGTAKVYNINDPTDHITLKCTI 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,065,990
Number of Sequences: 27780
Number of extensions: 280864
Number of successful extensions: 738
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)