Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte15d15
(633 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr... 111 6e-26
SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr 3... 39 5e-04
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces... 29 0.56
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 27 2.3
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 3.0
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 26 3.9
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi... 26 3.9
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 26 3.9
SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II precursor|Sc... 25 6.9
>SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
1|||Manual
Length = 225
Score = 111 bits (268), Expect = 6e-26
Identities = 50/122 (40%), Positives = 77/122 (63%)
Frame = +2
Query: 266 NTLDEPIKETFMRDLRAVGNKFYHVLIPREKTSLLKEWDLWGPLLLCTLMATILQGSAER 445
++LDEPI+ T + RA+G K +VL P+ +L++WDLWGPL+ ++A L S ++
Sbjct: 55 DSLDEPIRVTLFNEFRAIGEKLVYVLYPKN-AQVLRDWDLWGPLIFSLVIALALALSTDK 113
Query: 446 ADNSNDGGPEFAEVFVIVWIGAAVVTINSKLLGGNISFFQSVCVLGYCLFPVALALIICR 625
+ + F V ++W G AV ++N KLLG NIS FQS+C+LGY FP+ +A I+C
Sbjct: 114 IERES----VFTVVVALIWFGEAVCSLNIKLLGANISIFQSMCILGYSSFPLMIASIVCA 169
Query: 626 II 631
+
Sbjct: 170 FV 171
>SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr
3|||Manual
Length = 227
Score = 39.1 bits (87), Expect = 5e-04
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 7/129 (5%)
Frame = +2
Query: 242 SSGDNMEFNTLDEPIKETFMRDLRA----VGNKFYHVLIPREKTS--LLKEWDLWGPLLL 403
S G F+T P + + + +L + K HVL P + ++ + D+ GP+L
Sbjct: 42 SQGWLAAFSTSGYPGEPSLLEELEINFGHIKQKTTHVLNPFKHVDVHIMDDTDMAGPILF 101
Query: 404 CTLMATILQGSAERADNSNDGGPEFAEVFVIVWIGAAVVTINSKLLGG-NISFFQSVCVL 580
C L +T L S G F ++ I +G+ + +L+ N+ F ++V VL
Sbjct: 102 CLLFSTFL---------SLHGRSHFGYIYGIALLGSLSLHFVLRLMSAKNLFFTRTVSVL 152
Query: 581 GYCLFPVAL 607
GY L P+ +
Sbjct: 153 GYSLLPLVV 161
>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 350
Score = 29.1 bits (62), Expect = 0.56
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -3
Query: 154 HFNIIYLRIE*NVSLIVLLYFPNTSQNILYFQILPNTSNNSSL 26
H I L I N+S+ + L +P + ++ Y ++ NTS SSL
Sbjct: 139 HLKEIGLLIIDNLSMPIQLAYPTSPEDYAYLRLRRNTSKKSSL 181
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 27.1 bits (57), Expect = 2.3
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = -1
Query: 546 PPSSLELIVTTAA---PIQTITNTSANSGPPSLELSALSAEPWRIVAIRVQR 400
PP++ +V+ A P+ + TS N P+L S L A P VAI R
Sbjct: 310 PPTTAPAVVSPPASSFPLMSSAATSGNISSPALFDSELGARPEGSVAIEPSR 361
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 26.6 bits (56), Expect = 3.0
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Frame = +2
Query: 269 TLDEPIKETF-MRDLRAVGNKFYHVLIPREKTSLLKEW----DLWGPLLLCTLMATILQG 433
TL+ +K F M D G+K HVL R S+L W DL P + L+ +L
Sbjct: 1077 TLNMALKSEFDMTDFNNSGSKLMHVLHARIFISVLHLWRSADDLHLPYITRALLTNVLSN 1136
Query: 434 SAERAD 451
+ D
Sbjct: 1137 CYQFED 1142
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -2
Query: 251 LHWM-ALGQVYSFPPQLLPHLPLDTCRISSQTYSFQYYLFTN*IKCESYSFTL 96
LHW ++G + L + + C SQT + +FTN C+++ L
Sbjct: 252 LHWACSMGHIEMIKLLLRANADIGVCNRLSQTPLMRSVIFTNNYDCQTFGQVL 304
>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 26.2 bits (55), Expect = 3.9
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -3
Query: 208 NYSHISRWIHVVFRVKRIHFNIIYLR 131
+Y H S W+H+++ R F LR
Sbjct: 290 HYFHYSEWLHMIYGFLRAQFVFFLLR 315
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 26.2 bits (55), Expect = 3.9
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 7 YKKKSNPKTNYWKYLEVFGSKECFVMC 87
Y K S + + KYL+ F ++ C+++C
Sbjct: 896 YLKGSCSRLEFRKYLQKFNNETCYMIC 922
>SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II
precursor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 6.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 7 YKKKSNPKTNYWKYLEVFGSKE 72
+ SNP T+ W + EV G+ E
Sbjct: 62 FSSMSNPPTDEWGFCEVLGADE 83
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,980,039
Number of Sequences: 5004
Number of extensions: 66381
Number of successful extensions: 213
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -