Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte15d06
(576 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 30 1.4
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 30 1.4
U21733-1|AAB38384.1| 869|Caenorhabditis elegans UNC-44 protein. 30 1.4
U23453-9|AAC46755.1| 727|Caenorhabditis elegans Hypothetical pr... 29 3.1
U23139-9|AAN65327.1| 632|Caenorhabditis elegans Biotin protein ... 29 3.1
U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein ... 29 3.1
AY601656-1|AAS98221.1| 632|Caenorhabditis elegans biotin protei... 29 3.1
Z98877-5|CAD56616.1| 731|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z98877-4|CAB54473.2| 796|Caenorhabditis elegans Hypothetical pr... 28 5.5
AL117204-16|CAB55130.1| 389|Caenorhabditis elegans Hypothetical... 27 9.5
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 94 PDMIVESKRLLVAREP*SSKVRTMTALCLQNPKSSKRHFTVQ 219
P + +S L AR+ + T T + +P S RHFTVQ
Sbjct: 6322 PSRLSDSDAELTARDHDQERQETSTPQAILSPVDSDRHFTVQ 6363
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 94 PDMIVESKRLLVAREP*SSKVRTMTALCLQNPKSSKRHFTVQ 219
P + +S L AR+ + T T + +P S RHFTVQ
Sbjct: 6322 PSRLSDSDAELTARDHDQERQETSTPQAILSPVDSDRHFTVQ 6363
>U21733-1|AAB38384.1| 869|Caenorhabditis elegans UNC-44 protein.
Length = 869
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 94 PDMIVESKRLLVAREP*SSKVRTMTALCLQNPKSSKRHFTVQ 219
P + +S L AR+ + T T + +P S RHFTVQ
Sbjct: 197 PSRLSDSDAELTARDHDQERQETSTPQAILSPVDSDRHFTVQ 238
>U23453-9|AAC46755.1| 727|Caenorhabditis elegans Hypothetical
protein B0252.1 protein.
Length = 727
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 162 RPNFTALRLASH*QSFTFYNH 100
RPNFT L+ A H QS +YN+
Sbjct: 700 RPNFTQLKNAFHVQSTNYYNN 720
>U23139-9|AAN65327.1| 632|Caenorhabditis elegans Biotin protein
ligase protein 1,isoform b protein.
Length = 632
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +2
Query: 179 FKTRSLPNDILPYNGGNRDTF-*VRHFYSFFL 271
FK PN +L Y GGN + +RH SF L
Sbjct: 72 FKAMCKPNSVLVYTGGNDSLYSDIRHRLSFLL 103
>U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein
ligase protein 1,isoform a protein.
Length = 1051
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +2
Query: 179 FKTRSLPNDILPYNGGNRDTF-*VRHFYSFFL 271
FK PN +L Y GGN + +RH SF L
Sbjct: 491 FKAMCKPNSVLVYTGGNDSLYSDIRHRLSFLL 522
>AY601656-1|AAS98221.1| 632|Caenorhabditis elegans biotin protein
ligase, holocarboxylasesynthetase (70.9 kD) alternative
variant b protein.
Length = 632
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +2
Query: 179 FKTRSLPNDILPYNGGNRDTF-*VRHFYSFFL 271
FK PN +L Y GGN + +RH SF L
Sbjct: 72 FKAMCKPNSVLVYTGGNDSLYSDIRHRLSFLL 103
>Z98877-5|CAD56616.1| 731|Caenorhabditis elegans Hypothetical
protein Y69H2.3c protein.
Length = 731
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -2
Query: 269 KKNYKNVELKKCPDSPHCTVKC 204
KKN K V L CPD H + C
Sbjct: 594 KKNGKCVTLASCPDHDHTNITC 615
>Z98877-4|CAB54473.2| 796|Caenorhabditis elegans Hypothetical
protein Y69H2.3b protein.
Length = 796
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -2
Query: 269 KKNYKNVELKKCPDSPHCTVKC 204
KKN K V L CPD H + C
Sbjct: 659 KKNGKCVTLASCPDHDHTNITC 680
>AL117204-16|CAB55130.1| 389|Caenorhabditis elegans Hypothetical
protein Y116A8C.25 protein.
Length = 389
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 328 LYKNLSLWNHYDLSFITRSQKKTIKMSN 245
LY NL+ WNH+ S+ + +KK K+ N
Sbjct: 280 LYHNLNHWNHFGNSY-RKKEKKLDKIYN 306
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,753,456
Number of Sequences: 27780
Number of extensions: 219621
Number of successful extensions: 428
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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