Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte15d03
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 33 0.047
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 28 1.0
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 1.0
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 27 3.1
SPAC23C4.15 |rpb5||DNA-directed RNA polymerase I, II and III sub... 27 3.1
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 4.1
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 26 4.1
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 26 5.4
SPAC1782.03 |||microfibrillar-associated protein family protein|... 25 7.2
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe... 25 7.2
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 25 7.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 25 7.2
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 25 9.5
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 25 9.5
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo... 25 9.5
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 32.7 bits (71), Expect = 0.047
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = -2
Query: 518 SMPSPSKYSKCSLSAAGPNSLSSTRSVSRDVRPLASCHQRFRPPPMKSAQRSQCGRGVPA 339
S P P+ + C+ S + P + +ST V+ V P ++ PPP ++ +P+
Sbjct: 275 SSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPS 334
Query: 338 RSSS 327
S+S
Sbjct: 335 TSTS 338
Score = 29.9 bits (64), Expect = 0.33
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = -2
Query: 518 SMPSPSKYSKCSLSAAGPNSLSSTRSVSRDVRPLASCHQRFRPPPMKSAQRSQCGRGVPA 339
S P PS + C+ S + P + +ST V+ V P ++ PPP ++ + +
Sbjct: 329 SSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLS 388
Query: 338 RSSS 327
S+S
Sbjct: 389 TSTS 392
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 28.3 bits (60), Expect = 1.0
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +1
Query: 55 YGDPVVLRIALDRCREQLSATQ--TSLKKMVEEYSNTVPRREYDALESKHDSVLKNLSAL 228
+GD + + EQ+ T+LKK E +++ R++YD++ K DS+ ++L
Sbjct: 1372 FGDSISVHAKEFTLEEQMIKQMELTNLKKDQEANNSSDTRKKYDSIIKKRDSLREDLEKF 1431
Query: 229 EAEVKS 246
+ K+
Sbjct: 1432 RSTGKN 1437
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.3 bits (60), Expect = 1.0
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Frame = +1
Query: 4 QTKLKDLDGSFC----PSNDAYGDPVVLRIALDRCREQLSATQTSLKKMVEEYSNTVPRR 171
QT LKD S C P + AY +L L +E++ + M+ + NTV
Sbjct: 1151 QTSLKDGALSKCDQHHPDDKAYD---ILSEWLPEAKERIRNIKKLKTDMLTKLENTVKYL 1207
Query: 172 -EYDALESKHDSVLKNLSALEAEVKSLQEA 258
EYD+++ +S KNL++ E+ S+ +A
Sbjct: 1208 CEYDSIDKVRNSFFKNLNSF-YEMYSIAKA 1236
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 145 EYSNTVPRREYDALESKHDSVLKNLSALEAEVKSLQEA 258
E +N + +E + S + ++KN S LEAE+ S+ A
Sbjct: 419 EMNNVLDEKEEISASSALEKLIKNNSCLEAELPSMYAA 456
>SPAC23C4.15 |rpb5||DNA-directed RNA polymerase I, II and III
subunit Rpb5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 26.6 bits (56), Expect = 3.1
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -1
Query: 633 HVLLFP-EPDVVDDDADLPSRESQVPHLAFVAQVCRYRGV-HAESIKILQVFALGGR 469
H+LL P E + D L RE+Q+P + V RY G+ E +KI++ GR
Sbjct: 148 HILLSPDEKKELLDRYKL--RETQLPRIQLADPVARYLGLKRGEVVKIVRRSETSGR 202
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 91 RCREQLSATQTSLKKMVEEYSNTVPRREYDALESKHDSVLKNLSALEAEVKS 246
+ RE+ T+L++ ++ + D SK D LKN +A +AE +S
Sbjct: 178 QAREEAERAATALREAELKHRLAQANADVDVANSKLDIALKNEAAWKAERES 229
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -2
Query: 473 AGPNSLSSTRSVSRDVRPLASCHQRFRPPP 384
A P+S S RS SR P+ RFR P
Sbjct: 97 APPSSASGNRSYSRPFAPVVHSRIRFRKSP 126
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 25.8 bits (54), Expect = 5.4
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 79 IALDRCREQLSATQTSLKKMVEEYSNTVPRREYDALESKHDSVLKNL 219
++LD RE+L A LK +VE Y + ++ + ES H S L ++
Sbjct: 515 LSLDEIREELDARLPLLKSIVERY--LISKKNDNNNESIHISRLLDI 559
>SPAC1782.03 |||microfibrillar-associated protein family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 355
Score = 25.4 bits (53), Expect = 7.2
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = -2
Query: 608 MSLMMTLISRRESRRFRTLPS*RRYVGIEGSMPSPSKYSKCSLSAAGPNSLSSTRSV 438
M + LI + R+R+ R G+E S S Y + S S NS+SS+R V
Sbjct: 1 MPIDTPLIPHKPISRYRS----GRLEGLESESSSESDYEEVSDSHDQENSISSSRHV 53
>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 25.4 bits (53), Expect = 7.2
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +1
Query: 1 LQTKLKDLDGSFCPSNDAYGDPVVLRIALDRCREQLSATQTSLKKMVEEYSNTVPRREYD 180
L + L +L G+ C D L + D ++ + T +K+VEEY N V YD
Sbjct: 338 LASALVELIGA-CDKVDDLQYMEQLHNSTDLLKKAFAYTSEVFEKIVEEYKNIVQNDFYD 396
Query: 181 AL 186
+
Sbjct: 397 LM 398
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +1
Query: 100 EQLSATQTSLKKMVEEYSNTVPRREYDALESKHDSVLKNLSALEAE 237
E+L + L ++EY NTV + D +SK + ++LS LE E
Sbjct: 545 EELEQQISKLTDNLQEYRNTVRELKLDLEKSKKKN--EDLSKLEVE 588
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 7.2
Identities = 21/66 (31%), Positives = 26/66 (39%)
Frame = -2
Query: 521 GSMPSPSKYSKCSLSAAGPNSLSSTRSVSRDVRPLASCHQRFRPPPMKSAQRSQCGRGVP 342
G MP K S SAA P++ + S ++RP S R PP A P
Sbjct: 107 GGMPKLRHIGKSSASAAPPSAPAPPTPQS-ELRPPTSAPPRPSIPPPSPASAPPIPSKAP 165
Query: 341 ARSSSL 324
SSL
Sbjct: 166 PIPSSL 171
>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 992
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 573 ESQVPHLAFVAQVCRYRGVHAESIKILQ 490
ES +P+L C G H+ESI L+
Sbjct: 591 ESLIPYLPVYCDACLNLGTHSESIGDLE 618
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +1
Query: 94 CREQLSATQTSLKKMVEEYSNTVPRREYDALESKHDSVLKNLSALEA 234
C E S TSL+ ++EE + E ++L+S +S++ NL E+
Sbjct: 211 CIESRSTLITSLESLIEEQKKLLSEEE-ESLKSV-ESIISNLENKES 255
>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 534 IPALRRQGAEPATLATGDQRHHQRH 608
+P R Q P+++ QRHH+RH
Sbjct: 138 LPPSRHQSPPPSSVLAS-QRHHRRH 161
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.133 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,551,318
Number of Sequences: 5004
Number of extensions: 48140
Number of successful extensions: 189
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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