Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte15d03
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1031 - 23796755-23797171,23797243-23797595,23797676-23797715 32 0.46
10_08_0081 + 14710478-14710822 31 0.60
09_04_0468 + 17848144-17848174,17849032-17849378,17849505-17849921 29 3.2
02_02_0524 + 11179224-11179469,11179543-11181465 29 4.2
08_01_0585 + 5187545-5187961 28 5.6
09_06_0348 + 22452219-22452360,22452791-22452912,22453342-224534... 28 7.4
09_04_0376 + 17077737-17078447 28 7.4
02_05_1006 + 33448476-33448915,33449016-33449083,33449681-334497... 28 7.4
01_05_0610 - 23636097-23638958 28 7.4
01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411 28 7.4
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773... 27 9.8
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 27 9.8
09_06_0093 - 20808799-20808876,20809960-20810428,20811510-20812666 27 9.8
07_01_0687 - 5197349-5198665 27 9.8
04_04_0987 + 29938486-29938505,29938667-29938859,29938961-29941036 27 9.8
>08_02_1031 - 23796755-23797171,23797243-23797595,23797676-23797715
Length = 269
Score = 31.9 bits (69), Expect = 0.46
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +1
Query: 166 RREYDALESKHDSVLKNLSALEAEVKSLQ 252
R+ YDAL + HD++ ++ AL AE+K L+
Sbjct: 108 RQSYDALRADHDALRRDKDALLAEIKELK 136
>10_08_0081 + 14710478-14710822
Length = 114
Score = 31.5 bits (68), Expect = 0.60
Identities = 19/58 (32%), Positives = 21/58 (36%)
Frame = +2
Query: 377 TSSEVDETAGGNWRAA*RHGTRSECYLKS*VRPPRANTWSILMDSAWTPRYLHTCATK 550
TS E D AGG W R R + S P N W PR+L C K
Sbjct: 19 TSEEEDVDAGGRWTEV-RRKVRPHSWWSS--NAPTTNAWGAFTAPRTVPRWLQGCCFK 73
>09_04_0468 + 17848144-17848174,17849032-17849378,17849505-17849921
Length = 264
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 166 RREYDALESKHDSVLKNLSALEAEVKSLQ 252
R YD+L HD++ ++ AL AE+K L+
Sbjct: 103 RHSYDSLRLDHDALRRDKDALLAEIKELK 131
>02_02_0524 + 11179224-11179469,11179543-11181465
Length = 722
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/58 (27%), Positives = 33/58 (56%)
Frame = +1
Query: 73 LRIALDRCREQLSATQTSLKKMVEEYSNTVPRREYDALESKHDSVLKNLSALEAEVKS 246
LR+A++ +E L+ VE + R + + L +K + + +NL+A++AE++S
Sbjct: 157 LRLAVEYLKESARVQFPGLRAAVEARAAREARTQ-EILTAKVEQLRRNLAAIKAEIRS 213
>08_01_0585 + 5187545-5187961
Length = 138
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 461 SLSSTRSVSRDVRPLASCHQRFRPPPMKSAQRSQCGRG 348
+LSS R ++ RP A+ +R RP P + +R C G
Sbjct: 75 TLSSRRLAAKRRRPHAAIEERRRPRPAAAERRRPCVAG 112
>09_06_0348 +
22452219-22452360,22452791-22452912,22453342-22453436,
22453691-22453844,22453952-22454014,22454329-22454478,
22454650-22454982,22455086-22455820
Length = 597
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 58 GDPVVLRIALDRCREQLSATQT-SLKKMVEEYSNTVPRREYDALESKHDSVLKNLSALEA 234
G V+ + A ++ +E A +T ++ KM+ +Y N R+ A HD VL + L
Sbjct: 49 GGKVLYKFADEKEKEMHRAKETDAMVKMLSQYKNLCGSRKVRAHYLSHDDVLAGVVNLIK 108
Query: 235 EVK 243
++K
Sbjct: 109 KLK 111
>09_04_0376 + 17077737-17078447
Length = 236
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = -2
Query: 482 LSAAGPNSLSSTRSVSRDVRPLASCHQRFRPPPMKSAQRSQCGRGVPARSSSL 324
L+A SL S V P+ + +F PPP S + G G + +S+
Sbjct: 26 LTALSDQSLFMAAPTSPPVSPMGTPSPQFSPPPQMSVTTTTAGGGYQDQYNSM 78
>02_05_1006 +
33448476-33448915,33449016-33449083,33449681-33449751,
33449905-33450156,33450473-33450636,33450731-33450773,
33451044-33451161,33451384-33451481,33451550-33451594
Length = 432
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -2
Query: 509 SPSKYSKCSLSAAGPNSLSSTRSVSRDVRPLASCHQRFRPPPMKSAQRSQ 360
+PS + CSL+AA ++ +S R R RP ++ Q PP RS+
Sbjct: 8 NPSS-ATCSLAAASASTSASPRRRGRGRRPASAMGQAPSSPPGPGRSRSR 56
>01_05_0610 - 23636097-23638958
Length = 953
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 514 MDPSIPTYLRYEGKVRNLRLSRREISVIINDIWLGK 621
+ P PT+LRY V NL +S IS + D W K
Sbjct: 455 LGPKFPTWLRYLTDVYNLDISNTSISDKVPD-WFWK 489
>01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411
Length = 885
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 395 RPPPMKSAQRSQCGRGVPARSSSLQR 318
RPPP+ A R+ G +PARS R
Sbjct: 145 RPPPLSPAARNHHGADLPARSPRRSR 170
>10_08_0829 - 20871810-20872011,20873226-20873359,20873480-20877313,
20878057-20878177,20878414-20878451,20879096-20879218,
20879308-20879505,20880270-20880356
Length = 1578
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Frame = +1
Query: 73 LRIALDRCREQLSATQT---SLKKMVEEYSNTVPRREYDALESKHDSV--LKNLSALEAE 237
L+ +D E+ + QT LKK E E + +SK ++ K L +LEA+
Sbjct: 920 LQATVDHVVEECKSLQTLTADLKKQKLEVHGYASHLEQELEQSKRKTMDFCKTLESLEAK 979
Query: 238 VKSLQE 255
+ SLQE
Sbjct: 980 LSSLQE 985
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +1
Query: 85 LDRCREQLSATQTSLKKMVEEYSNTVPRREYDALESKHDSVLKNLSALEAEVKSLQEAHR 264
L C + S T+T LK M E Y + + LES+ + + + ++ L E+ ++ H+
Sbjct: 784 LSACEKSNSLTETQLKCMAESYKSLELHKL--KLESEIEVMHRQINTLRTELADERQNHQ 841
>09_06_0093 - 20808799-20808876,20809960-20810428,20811510-20812666
Length = 567
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +1
Query: 331 LERAGTPRPHWDLCADFIGGGRNRWWQLASGLTSRDTLRVLLKELGPAA 477
+ RA P P+W +C GG + W + L + +R + GP +
Sbjct: 94 VSRAVAPLPYWQMCVFLCLGGNSTTWMNTAVLVT--CIRNFRRSRGPVS 140
>07_01_0687 - 5197349-5198665
Length = 438
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 13 LKDLDGSFCPSNDAYGDPVVLRIALD 90
L D DGSF D+ GD VLR+ D
Sbjct: 165 LSDFDGSFKYGRDSNGDYKVLRVLTD 190
>04_04_0987 + 29938486-29938505,29938667-29938859,29938961-29941036
Length = 762
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +1
Query: 85 LDRCREQLSATQTSLKKMVEEYSNTVPRREYDALESKHDSVLKNLSALEAEVKSLQE 255
+DR R Q+ SL+ E Y + Y+ + K K++ +EAE KS E
Sbjct: 491 IDRARAQVEELNVSLQNTKESYEVMLDEANYEKVCLK-----KSVERMEAETKSASE 542
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.133 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,310,530
Number of Sequences: 37544
Number of extensions: 378146
Number of successful extensions: 1436
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1435
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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