Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15d03
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    31   0.54 
X70833-1|CAA50181.1|  575|Caenorhabditis elegans Cytoplasmic int...    30   1.6  
U29379-3|AAF99979.3|  558|Caenorhabditis elegans Intermediate fi...    30   1.6  
U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protei...    29   2.2  
AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical...    29   2.2  
AC084159-2|AAK39359.1|  659|Caenorhabditis elegans Hypothetical ...    29   2.9  
U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z78064-5|CAB01511.1|  473|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p...    28   6.6  
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p...    28   6.6  
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U64857-15|AAC25858.1|  470|Caenorhabditis elegans Hypothetical p...    28   6.6  
AC084155-5|AAK84606.1|  433|Caenorhabditis elegans Hypothetical ...    28   6.6  
Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical p...    27   8.7  
Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U80838-1|AAU05570.1|  597|Caenorhabditis elegans Abnormal cell l...    27   8.7  

>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 21/65 (32%), Positives = 26/65 (40%)
 Frame = -2

Query: 512 PSPSKYSKCSLSAAGPNSLSSTRSVSRDVRPLASCHQRFRPPPMKSAQRSQCGRGVPARS 333
           PSP +  + S S    +     R VSR   P     QR R PP    +R Q     P R 
Sbjct: 115 PSPPRRRRISRSPVRRSRSPPRRQVSRSRSPPPRRQQRSRSPPPAKRRRDQSRSKSPPRR 174

Query: 332 SSLQR 318
           +  QR
Sbjct: 175 NYRQR 179


>X70833-1|CAA50181.1|  575|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 575

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
 Frame = +1

Query: 88  DRCREQLSATQTSLKKMVEE---YSNTVPRREY--DALESKHDSVLKNLSALEAEVKSLQ 252
           D+ R QL   +  +KK+VEE   Y N +   E   D    + D+VL  L ALEAE++ L+
Sbjct: 135 DKERAQL---EDQIKKLVEELNNYRNKLHEAERGADVTRKELDNVLGRLGALEAEIELLK 191


>U29379-3|AAF99979.3|  558|Caenorhabditis elegans Intermediate
           filament, a protein 4 protein.
          Length = 558

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
 Frame = +1

Query: 88  DRCREQLSATQTSLKKMVEE---YSNTVPRREY--DALESKHDSVLKNLSALEAEVKSLQ 252
           D+ R QL   +  +KK+VEE   Y N +   E   D    + D+VL  L ALEAE++ L+
Sbjct: 116 DKERAQL---EDQIKKLVEELNNYRNKLHEAERGADVTRKELDNVLGRLGALEAEIELLK 172


>U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protein 1
            protein.
          Length = 2427

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +1

Query: 169  REYDALESKHDSVLKNLSALEAEVKSLQE 255
            R   AL+ KH+ V ++L+AL  ++KSL E
Sbjct: 1225 RSVQALQRKHEGVERDLAALGDKIKSLDE 1253


>AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical
           protein Y47G6A.17 protein.
          Length = 1736

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +1

Query: 82  ALDRCREQLSATQTSLKKMVEEYSNTVPRREYDALESKHDSVLKNLSALEA---EVKSLQ 252
           A+ R + ++  T   + ++      +VP  EYD L  K+  ++K  + +E    EV + Q
Sbjct: 742 AIGRLKYEVETTTIEIGRLQTRLLQSVPTEEYDKLMRKYKRLIKETTGVETNNEEVMARQ 801

Query: 253 E 255
           E
Sbjct: 802 E 802


>AC084159-2|AAK39359.1|  659|Caenorhabditis elegans Hypothetical
           protein Y73B3A.1 protein.
          Length = 659

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 20/53 (37%), Positives = 28/53 (52%)
 Frame = -2

Query: 491 KCSLSAAGPNSLSSTRSVSRDVRPLASCHQRFRPPPMKSAQRSQCGRGVPARS 333
           + S+ A  P+  +S RSVSR  +P  S       PP K+ QR +  R VP +S
Sbjct: 360 EASIPAPAPSPPASRRSVSRTTQPSTSSFATPTEPPAKN-QRKR--RVVPPKS 409


>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical protein
            F58G4.1 protein.
          Length = 1974

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/79 (22%), Positives = 34/79 (43%)
 Frame = +1

Query: 19   DLDGSFCPSNDAYGDPVVLRIALDRCREQLSATQTSLKKMVEEYSNTVPRREYDALESKH 198
            DL+      ND   D      AL + ++++      LKK V +   T+ ++E +     H
Sbjct: 924  DLEKQMANMNDQLCDEEEKNAALTKQKKKIEQDNEGLKKTVSDLETTIKKQESEKQAKDH 983

Query: 199  DSVLKNLSALEAEVKSLQE 255
                  + +L+ E++S  E
Sbjct: 984  -----QIRSLQDEIQSQDE 997


>Z78064-5|CAB01511.1|  473|Caenorhabditis elegans Hypothetical
           protein F57B1.2 protein.
          Length = 473

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 513 HGPLDTYIPALRRQGAEPATLATGDQRHHQ 602
           H PLDT  P  RR  ++P T+    QR H+
Sbjct: 29  HQPLDTSTPVTRRD-SQPGTITGTIQRFHE 57


>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
           protein ZK617.1b protein.
          Length = 7158

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
 Frame = -2

Query: 551 PS*RRYVGIEGSMPSPS-KYSKCSLSAAGPN--SLSSTRSVSRDVRPLASCHQRF-RPPP 384
           PS R+    + + P+PS K S    +A+G    S S+T + S       +   ++ RPP 
Sbjct: 320 PSTRKSPSRKSASPTPSRKGSSAGGAASGTTGASASATSATSGGSASSDASRDKYTRPPI 379

Query: 383 MKSAQRSQCGR 351
           +  A RSQ GR
Sbjct: 380 VLEASRSQTGR 390


>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
           protein ZK617.1a protein.
          Length = 6839

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
 Frame = -2

Query: 551 PS*RRYVGIEGSMPSPS-KYSKCSLSAAGPN--SLSSTRSVSRDVRPLASCHQRF-RPPP 384
           PS R+    + + P+PS K S    +A+G    S S+T + S       +   ++ RPP 
Sbjct: 320 PSTRKSPSRKSASPTPSRKGSSAGGAASGTTGASASATSATSGGSASSDASRDKYTRPPI 379

Query: 383 MKSAQRSQCGR 351
           +  A RSQ GR
Sbjct: 380 VLEASRSQTGR 390


>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical
           protein ZK617.1b protein.
          Length = 7158

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
 Frame = -2

Query: 551 PS*RRYVGIEGSMPSPS-KYSKCSLSAAGPN--SLSSTRSVSRDVRPLASCHQRF-RPPP 384
           PS R+    + + P+PS K S    +A+G    S S+T + S       +   ++ RPP 
Sbjct: 320 PSTRKSPSRKSASPTPSRKGSSAGGAASGTTGASASATSATSGGSASSDASRDKYTRPPI 379

Query: 383 MKSAQRSQCGR 351
           +  A RSQ GR
Sbjct: 380 VLEASRSQTGR 390


>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical
           protein ZK617.1a protein.
          Length = 6839

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
 Frame = -2

Query: 551 PS*RRYVGIEGSMPSPS-KYSKCSLSAAGPN--SLSSTRSVSRDVRPLASCHQRF-RPPP 384
           PS R+    + + P+PS K S    +A+G    S S+T + S       +   ++ RPP 
Sbjct: 320 PSTRKSPSRKSASPTPSRKGSSAGGAASGTTGASASATSATSGGSASSDASRDKYTRPPI 379

Query: 383 MKSAQRSQCGR 351
           +  A RSQ GR
Sbjct: 380 VLEASRSQTGR 390


>U64857-15|AAC25858.1|  470|Caenorhabditis elegans Hypothetical
           protein C37C3.1 protein.
          Length = 470

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 31/95 (32%), Positives = 40/95 (42%), Gaps = 8/95 (8%)
 Frame = -2

Query: 620 FPSQMSLMMTLISRRESRRFRTLPS*RRYVGIEGS--MPSPSKYSKCSLSAAG---PNSL 456
           FP    L    ISRR+S    T  S RRY+         SP++     LS +G   P   
Sbjct: 271 FPRSSPLRAAEISRRKSTSHSTSLSKRRYLRSRSRSLSKSPARRRSRHLSRSGSRTPAQR 330

Query: 455 SSTRSVSRDVRPLASCHQRFR---PPPMKSAQRSQ 360
            S RS S   R  +  H R R   PP  +  +RS+
Sbjct: 331 HSRRSESTS-RRRSGRHSRSRSRSPPRKRPVRRSR 364


>AC084155-5|AAK84606.1|  433|Caenorhabditis elegans Hypothetical
           protein Y45G5AM.7 protein.
          Length = 433

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = +1

Query: 85  LDRCREQLSATQTSLKKMVEEYSNTVPRREYDALESKHDSVLKNLSALEAEVK 243
           +D  +E+ SAT      ++EE + TV +++ +  E K D + K  S ++ ++K
Sbjct: 285 VDAHQEKFSATVNHQNAVIEELTQTVKQKQSEIAELK-DQLEKQESRIKGDLK 336


>Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical
           protein C34E11.3 protein.
          Length = 1577

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +1

Query: 88  DRCREQLSATQTSLKKMVEEYSNTVPRREYDALESKHDSVLKNLSALEAEVKSLQE 255
           +R R+Q  A +   +K ++EY N+ P  E  A   K DS    +  LE E++  +E
Sbjct: 182 ERSRDQAEAEKMHSEKKLDEYMNSCP--EAVAASIKSDSA--KVKELEYEIRVAKE 233


>Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical
           protein C34E11.3 protein.
          Length = 1577

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +1

Query: 88  DRCREQLSATQTSLKKMVEEYSNTVPRREYDALESKHDSVLKNLSALEAEVKSLQE 255
           +R R+Q  A +   +K ++EY N+ P  E  A   K DS    +  LE E++  +E
Sbjct: 182 ERSRDQAEAEKMHSEKKLDEYMNSCP--EAVAASIKSDSA--KVKELEYEIRVAKE 233


>Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical
           protein C34E11.3 protein.
          Length = 1577

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +1

Query: 88  DRCREQLSATQTSLKKMVEEYSNTVPRREYDALESKHDSVLKNLSALEAEVKSLQE 255
           +R R+Q  A +   +K ++EY N+ P  E  A   K DS    +  LE E++  +E
Sbjct: 182 ERSRDQAEAEKMHSEKKLDEYMNSCP--EAVAASIKSDSA--KVKELEYEIRVAKE 233


>U80838-1|AAU05570.1|  597|Caenorhabditis elegans Abnormal cell
           lineage protein 42,isoform b protein.
          Length = 597

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -3

Query: 151 STLPPSSSN*FESQTVVLCIYPGLSSAPQDLHMHHWTGKMNHQGL*ASFE 2
           +TLPP  +  FE +   +   P  S++    H HH + K  +QG  A+ +
Sbjct: 292 NTLPPVMAKTFEDELRTIMNKPVPSTSRHSHHHHHSSLKDQNQGFPANID 341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.133    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,547,672
Number of Sequences: 27780
Number of extensions: 286323
Number of successful extensions: 945
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)