Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15c21
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    29   0.72 
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    27   2.2  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    25   8.8  

>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -2

Query: 259 VVIPNDNNEIVNPLNFSNC 203
           V +PN+NN+++ PL+  +C
Sbjct: 137 VTLPNENNQVIEPLSSQSC 155


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -3

Query: 552 QIRTHLISKPTIIL--ILFFFYSTFILFSKRVHQI*VTVEYIYA 427
           Q +  LIS   +IL  +LFF +S F L+      + +T  Y+YA
Sbjct: 83  QYKAFLISLFALILPGVLFFIFSAFWLWHHVSPAVPITFAYLYA 126


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 157 YELYDLCIRSWH 192
           Y++Y LC+ SWH
Sbjct: 152 YDIYTLCLVSWH 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,601,368
Number of Sequences: 5004
Number of extensions: 54571
Number of successful extensions: 123
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)