Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15c20
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.65 
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    25   6.1  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    25   6.1  
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    25   8.1  

>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = +3

Query: 255 KSSTQSRKEKATIREMEGREGEAKEGGCSVEEETILNWS---STCAIQISTTTPKTNAKY 425
           KSS Q  + K  I +      +AKE G +VE  + L++S   S  A+  ST TP      
Sbjct: 289 KSSQQPVRTKPRIAQSPFLAQDAKENGGNVEVSSPLSFSASKSPAAVDSSTKTPTEQVNV 348

Query: 426 IRQGHTITVS 455
           + +    T S
Sbjct: 349 VSKQAPTTSS 358


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +2

Query: 404 PQNQCQVHQAGSHDHSQPRIEQVRRLIVESVLHSHLHQKMLYSNLHRIWLKLPN 565
           PQ   ++H   SH  S      +    V S+LH  L     + ++H I++ L N
Sbjct: 66  PQTLTRIHDITSHLPSS-----IEEYSVYSLLHERLWSLHSFEDIHEIFISLGN 114


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +3

Query: 276 KEKATIREMEGREGEAKEGGCSVEEETILNWSSTCAIQISTTTPKTNAKYIRQGHTITVS 455
           +E+   + M+    E K     ++E  + + +ST +     T+P  N  Y+ +  T+T S
Sbjct: 142 EEEEDDQTMDEDAFERKSMQGELKERNLTDKTSTLSTSFGETSPDVNPFYLSEWPTVTDS 201

Query: 456 QE*SKS 473
              SKS
Sbjct: 202 ILLSKS 207


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -3

Query: 424 YLALVLGVVVLIWMAHVELQLRMVSSST-LQPPSFASPSLPSISLIVAFSF 275
           +L   + V    W   + L L +  SST +  P F+  +L ++S ++ FSF
Sbjct: 271 FLGAPVAVATTFWFQSICLILYICFSSTPIPWPGFSRQALKNLSPMLHFSF 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,938,956
Number of Sequences: 5004
Number of extensions: 31332
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)