Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte15c20
(582 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611... 30 1.5
12_02_0064 + 13104835-13105311,13107731-13108119,13108156-131082... 29 2.0
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 29 2.0
05_07_0247 + 28643862-28644310,28645151-28645207,28645644-286489... 29 2.7
02_03_0406 + 18663986-18664059,18665082-18665405,18665499-186655... 29 3.6
01_05_0082 - 17972276-17973268 29 3.6
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967... 28 4.7
>05_04_0306 +
20058640-20059159,20060406-20060819,20060921-20061190,
20062179-20062849
Length = 624
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -3
Query: 433 CLMYLALVLGVVVLIWMAHVELQLRMVSSSTL--QPPSFASPSLPS 302
CL+Y++ + AHV L L +T QPPSFA+P LP+
Sbjct: 91 CLLYVSSRQRCHSMASHAHVALALSASRPATRPPQPPSFAAPPLPT 136
>12_02_0064 +
13104835-13105311,13107731-13108119,13108156-13108286,
13108378-13108469,13108488-13109264,13109291-13109320
Length = 631
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +3
Query: 252 HKSSTQSRKEKATIREMEGREGEAKEGGCSVEEETILNWSSTCAIQISTTTP 407
H++ S + + EGR+GE +EGG E ET++ + A++ TP
Sbjct: 400 HRAPASSDSDADDEEDAEGRDGE-EEGGEEEEVETVVEKAKGEAVEGRAVTP 450
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +2
Query: 380 RHPN*YHHPQNQCQVHQAGSHDHSQPRIEQVRRLIVESVLHSHLHQKMLYSNLHR--IWL 553
+H N HH Q Q Q H + Q + +Q ++ + + H +L Q+ + WL
Sbjct: 184 QHHNQNHHQQQYQQQQQQYQHQNLQQQYQQQQQNLQQQYQHQNLQQQQQQQQQQQQPSWL 243
Query: 554 KLPNLTQNK 580
+ + Q K
Sbjct: 244 QQQDARQRK 252
>05_07_0247 +
28643862-28644310,28645151-28645207,28645644-28648950,
28649069-28649144,28649356-28649426,28649524-28649589,
28649677-28649766,28649874-28650050,28650513-28650548
Length = 1442
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +3
Query: 249 AHKSSTQSRKEKATIREMEGREGEAKEGGCSVEEETILNWSSTCAIQISTTTPKTN 416
A+++ T+S E ++E E E + G C+ EE+ ++ S C + S T + N
Sbjct: 813 ANRNVTESPVETPIPEQVENVEIEDRVGSCAHSEESTVDKDSECPEEGSDITSQNN 868
>02_03_0406 +
18663986-18664059,18665082-18665405,18665499-18665559,
18666136-18666282,18666368-18666492,18666619-18666648,
18666689-18666893,18667532-18667741,18667886-18667888,
18670034-18670942,18671239-18672069
Length = 972
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 140 LGFRGDCKTISENVKAIVLAFLIALESWRNVTVLLYSSQKL 262
LGF G C I +VK L L+ ES + +LL S + L
Sbjct: 51 LGFHGRCCRIETSVKCYFLQSLVDSESMISPNLLLLSDEAL 91
>01_05_0082 - 17972276-17973268
Length = 330
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +2
Query: 383 HPN*YHHPQNQCQVHQ--AGSHDH 448
H + +HHP +VH+ AGSHDH
Sbjct: 204 HDDDHHHPALSHEVHEESAGSHDH 227
>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
16196822-16197001,16197090-16197371,16197471-16199141,
16199257-16199463,16199566-16199700,16199792-16200082,
16200403-16200621,16200876-16201034,16201120-16201181,
16201257-16201383,16201460-16201693,16201777-16202003,
16202163-16202257,16202341-16202468,16202574-16202594,
16202765-16202921,16203007-16203075,16203228-16203341,
16203415-16203491,16203576-16203688,16204432-16204507,
16204592-16204756,16204825-16204952,16205049-16205130,
16205426-16205548,16205633-16205860,16205933-16206034,
16206144-16206341,16206581-16206760,16206868-16207020,
16207690-16207797,16208201-16208355,16208786-16208912,
16209825-16209914,16209986-16210127,16210303-16210379,
16210467-16210582,16210638-16210773,16211130-16211198,
16211279-16211361,16211655-16211720,16211788-16211974,
16212054-16213547,16213635-16214165,16214234-16214363,
16214407-16215878,16216359-16216364,16216750-16217055,
16217364-16217468,16217577-16217772,16217862-16217929,
16218853-16220631,16221026-16221151,16221604-16221780,
16221997-16222128,16223461-16223498,16223710-16223788,
16224175-16224284,16224787-16224935,16225027-16225197,
16225281-16225552,16226355-16226442,16227942-16228369
Length = 5157
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 464 EQVRRLIVESVLHSHLHQKMLYSNLHRIWLKLPN 565
+ + +V+ VL HLH K+ SNL+ + + N
Sbjct: 1156 DDTEKAVVQEVLERHLHVKLSISNLYNMEVSCDN 1189
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,191,471
Number of Sequences: 37544
Number of extensions: 195768
Number of successful extensions: 746
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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