Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15c20
         (582 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.41 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.72 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   1.7  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   3.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.9  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.4 bits (53), Expect = 0.41
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 374 HMRHPN*YHHPQNQCQVHQAGSH 442
           H  HP+ YH  +     HQ G+H
Sbjct: 319 HQHHPSQYHPHRGSSPHHQHGNH 341


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 8/38 (21%), Positives = 20/38 (52%)
 Frame = +2

Query: 410 NQCQVHQAGSHDHSQPRIEQVRRLIVESVLHSHLHQKM 523
           N C++H+A  H  S     ++ R +   + ++H+ + +
Sbjct: 127 NHCELHRAACHSGSSLTKSRLMRCLHHDIENAHIRRTL 164


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 45  SGLNGEFRLPGTIKETREEAQTKTDAV 125
           S LNGEF +     E REEA  K   V
Sbjct: 416 SFLNGEFEVEPAHGEDREEALQKAGIV 442



 Score = 21.0 bits (42), Expect = 8.9
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -3

Query: 430 LMYLALVLGVVVLIWMAHVELQLRMVSSSTLQPPSFASPSLPSISLI 290
           LMY        + IW+    L     +SS L+P +  S    S++L+
Sbjct: 666 LMYAIAGSQCFINIWLLGSRLDWEDHASSPLEPSAVPSKFCLSVTLL 712


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 451 SAKNRASQKIDSGKCASQSFAPKNAVFKPPQN 546
           SA       + SGKC  + F PK+   +  Q+
Sbjct: 402 SAYGELLHALTSGKCEHRPFEPKSTAVQKYQD 433


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 421 LALVLGVVVLIWM 383
           LA+VLGV ++ W+
Sbjct: 621 LAIVLGVFLICWL 633


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,212
Number of Sequences: 438
Number of extensions: 1847
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)