Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15c14
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|...    30   0.37 
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    28   1.1  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   3.5  
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran...    27   3.5  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    26   4.6  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   8.0  
SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4 |Schiz...    25   8.0  
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    25   8.0  

>SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 290

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 22/90 (24%), Positives = 37/90 (41%)
 Frame = +3

Query: 345 GYFAFDLLWCFVYWGDHYLMLVHHTSALVAVTVYTQKDYTGCTFACTLAFLEVTNPLLQL 524
           GYF +DL     Y     +  V H  A + V  ++ + Y    +  T    E++ P L +
Sbjct: 126 GYFVWDLYITVRYVHITGIGFVIHAIAALFVITFSYRPYL-MYYGPTYLSWELSTPFLNI 184

Query: 525 RWFLKSNGYAKTVLYTMVEVTYLVTFLFVR 614
            +FL       +    +     +VTF+ VR
Sbjct: 185 HYFLDKTNRTGSKFQMINGFILIVTFICVR 214


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 27/101 (26%), Positives = 38/101 (37%), Gaps = 6/101 (5%)
 Frame = +3

Query: 273 EAITPCRLTMKTTPWHYALMLWSWGYFAFDLLWCFVYWGDHYLMLVHHTS------ALVA 434
           EA        K  PW+    +W   +     L C V  G    +L H T+      +  A
Sbjct: 69  EAFNEKAAEKKLLPWYRRYFIWILIFIV--ALICSVLIGVLGGVLGHRTAVRDRHPSYKA 126

Query: 435 VTVYTQKDYTGCTFACTLAFLEVTNPLLQLRWFLKSNGYAK 557
            T    K+Y G TF     F+ +T+P      +L  N  AK
Sbjct: 127 KTYSLVKEYKGTTFFDGFDFMNITDPTHGFVQYLDRNSSAK 167


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 458 LYRLHVCLHAGVFRSHQSPTATTMVFKKQWLCQNRSLHY 574
           ++ LH  LH+ VF S + P+    +F+    C N+ L Y
Sbjct: 95  VFHLHK-LHSAVFTSRRDPSFADDLFESSKPCLNQLLSY 132


>SPCC417.11c |||glutamate-1-semialdehyde
           2,1-aminomutaseaminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 435

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 452 LCVYSNSNQSASVMNEHQIVIAPVHEAPQ 366
           LC Y+NS Q   ++N  Q + A + EA Q
Sbjct: 185 LCEYNNSTQFKELVNSSQDIAAVIVEAMQ 213


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +2

Query: 263 MRSRSYNAMPTYHEDNAVALRSNAMVLGLLRIRPSV 370
           M  +SY   P +   N+  L++++   G   +RP+V
Sbjct: 276 MAHQSYGTSPAFANGNSPTLKNDSSFFGSASVRPTV 311


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 461  IVFLCVYSNSNQSASVMNEHQIVIAPV 381
            +VFLC YSN  Q+ +V    + V+  V
Sbjct: 1670 LVFLCAYSNEQQTQAVDEIRREVLTSV 1696


>SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 218

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +3

Query: 234 SVATVVGLYQCGAEAITPCRLTMKTTPW--HYALMLWSWGYFAFDLLWCFVYWG 389
           +V +V+ L  C   A T  R   K TP       +  S G F   +  C+VYWG
Sbjct: 108 AVMSVLLLSWCDTTASTVGRKWGKYTPKIAKNKSLAGSLGAFVCGVFCCYVYWG 161


>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 440 CIHTKRLYRLHVCLHAGVFRSHQSPTATTMVF 535
           C+ T R   L V   AG F +  SP  T +VF
Sbjct: 160 CVRTSRPVYLAVPSDAGYFYTDASPLKTPLVF 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,945,198
Number of Sequences: 5004
Number of extensions: 62112
Number of successful extensions: 147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)