Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15c12
         (187 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    24   2.3  
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   2.3  
SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subun...    24   3.0  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    23   4.0  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          23   5.3  
SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    23   7.0  
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual        22   9.3  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    22   9.3  

>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 73  LHSNYVTQWTISIVNLKMVRNTHLFCKMYSKLV-ANKK 183
           L+ NY++ WT+       ++NTH   + Y   V  N+K
Sbjct: 367 LNRNYLSAWTLMGHEYVELKNTHAAIESYRLAVDVNRK 404


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 46  KSLHQHIQLLHSNYVTQW 99
           +S H +I  L+SNY T W
Sbjct: 166 QSAHPYISSLNSNYPTTW 183


>SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subunit
           Rpb11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 123

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 7/30 (23%), Positives = 20/30 (66%)
 Frame = +1

Query: 40  SCKSLHQHIQLLHSNYVTQWTISIVNLKMV 129
           + KSL  H++ +  N++ +W + +++++ V
Sbjct: 89  AAKSLITHLEEIKVNFMREWELKMISVEGV 118


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 64  IQLLHSNYVTQWTISIVNLKMVRNTHLF 147
           I+ +  + VT+W +S+ +   +RN  LF
Sbjct: 894 IRKIIDSEVTEWDVSVDDSGCIRNPQLF 921


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 1   PLPEQRATNTTVLSCKSLHQHIQ 69
           PLPE+  +   +  C  L+ H+Q
Sbjct: 395 PLPEEEMSKLHIERCARLYPHMQ 417


>SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 120

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 52  RIYRIAPLCWWHAALAK 2
           R Y   PLC WH + A+
Sbjct: 102 RTYLEVPLCRWHISQAR 118


>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 57  STYTAVTLKLCNAMDDFYSEFKNG*KHTL 143
           S YT V +   N +  + SE KN   H+L
Sbjct: 396 SEYTVVKVDFYNNIKSYLSEVKNTEIHSL 424


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 57  STYTAVTLKLCNAMDDFYS 113
           +TY  +TL LCNA   +++
Sbjct: 365 ATYMNITLMLCNACGIYWT 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 807,528
Number of Sequences: 5004
Number of extensions: 12586
Number of successful extensions: 37
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 42
effective length of database: 2,152,310
effective search space used: 40893890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)