Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte15c10
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0928 + 24488891-24489675,24490369-24490421,24490479-244912... 31 1.1
07_03_1621 + 28187846-28187915,28189214-28189293,28189485-281895... 29 3.2
06_02_0347 - 14926801-14926821,14927615-14928529,14928530-149286... 29 4.3
05_01_0210 + 1583176-1584177 28 5.6
01_04_0019 - 15134494-15135863,15135966-15136083,15136226-151362... 28 5.6
12_02_0998 + 25126114-25126596,25129213-25129339,25129349-251294... 28 7.5
07_03_1253 + 25201629-25202084,25203264-25203399,25204564-252047... 28 7.5
02_05_0007 + 24918163-24918420,24919360-24919410,24919411-249194... 28 7.5
01_06_1556 - 38222071-38222708,38222795-38222822,38222950-382230... 28 7.5
>12_02_0928 +
24488891-24489675,24490369-24490421,24490479-24491229,
24491322-24491533,24491780-24492570,24492686-24492784
Length = 896
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -1
Query: 351 STIPSSNALVLSNSCCSTRNTCRLKSTELRSVSMHWSHIAVDHCAD 214
+TIP N +S C N+ R +L S++ +DHC D
Sbjct: 683 TTIPLKNLRKISLVLCELTNSLRGSKVDLSMTFPRLSNLTIDHCID 728
>07_03_1621 +
28187846-28187915,28189214-28189293,28189485-28189550,
28189801-28189848,28189967-28190034,28190107-28190179,
28190284-28190445,28190620-28190814,28191114-28191190,
28191280-28191481
Length = 346
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -1
Query: 294 NTCRLKSTELRSVSMHWSHIAVDHCADDES*C 199
N CR ST SV H++++ VD ADD S C
Sbjct: 277 NCCRCISTWSLSVQDHFTYLGVDMEADDWSTC 308
>06_02_0347 -
14926801-14926821,14927615-14928529,14928530-14928634,
14928698-14929003
Length = 448
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = +3
Query: 513 EMTPTFQQTIGSTPKTRKRA*KGS---RGEQLLLKGQKLNSNGP 635
++ P FQQ + +TPK+ R S +QL +KG+ ++S+ P
Sbjct: 265 DVMPQFQQQVAATPKSSSRGANRSLPTSSKQLDVKGKAVSSSQP 308
>05_01_0210 + 1583176-1584177
Length = 333
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 266 SSVDFRRQVLRVEQQLLERTKALEDGIVEVKTEPLDVNGGEDSDD 400
SS F ++ R+ +ER +ALE V+ K D +GG D D+
Sbjct: 149 SSFPFHDELRRIFDARVERARALERKKVKGKDPDDDHDGGGDGDE 193
>01_04_0019 -
15134494-15135863,15135966-15136083,15136226-15136278,
15136293-15137271,15138980-15139054
Length = 864
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -3
Query: 571 ALFLV-FGVDPIVCWNVGVISLPLGIHADTLLPHTSVTLLYIWLRFLLNLHFGARQK 404
ALFLV FGV V + ++ +P G +L V ++Y+W H+G R+K
Sbjct: 524 ALFLVAFGVVEAVYLSAALMKVPQGGWLPLVLSLVFVAVMYVW-------HYGTRRK 573
>12_02_0998 +
25126114-25126596,25129213-25129339,25129349-25129459,
25130122-25130270,25130356-25130643,25130753-25130941,
25131445-25131619,25132219-25132316
Length = 539
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/66 (27%), Positives = 35/66 (53%)
Frame = +2
Query: 182 ERGLGEHQLSSSAQWSTAICDQCIDTLRSSVDFRRQVLRVEQQLLERTKALEDGIVEVKT 361
+R G +L A + ++ + T++S D + VLR+ + + +D +VE++
Sbjct: 200 QRAAGPTRLLVPASQAGSLIGKQGATIKSIQDASKCVLRILESV-PPVALSDDRVVEIQG 258
Query: 362 EPLDVN 379
EPLDV+
Sbjct: 259 EPLDVH 264
>07_03_1253 +
25201629-25202084,25203264-25203399,25204564-25204700,
25205439-25206121,25206767-25206911,25207669-25207701
Length = 529
Score = 27.9 bits (59), Expect = 7.5
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = -2
Query: 413 KAESNR-RNLLRHSRPRAPFSLRLYHLLML*SSPTVAARHATPAV*SPQSCEAYRCIGRI 237
K NR ++L+ ++RP LRL ++ P + R++ PA + AYRC+
Sbjct: 312 KTRPNREQSLVEYARPCLRDPLRLIRIM----DPALEGRYS-PAAAREAAAVAYRCLSGS 366
Query: 236 SRSTIARTTKADALQVLVL 180
++ + DAL+ L++
Sbjct: 367 PKNRPDMSAVVDALEPLLV 385
>02_05_0007 +
24918163-24918420,24919360-24919410,24919411-24919480,
24919645-24919830,24920127-24920275,24921310-24921417,
24921501-24921638,24922574-24922853,24922924-24923047,
24923197-24923312,24923612-24923619
Length = 495
Score = 27.9 bits (59), Expect = 7.5
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = -3
Query: 556 FG-VDPIVCWNVGVISLPLG--IHADTLLPHTSVTLLYIWLRFLLNLHFGARQKVIV--G 392
FG + +VC+ +ISL I ++P T + L+Y W L FG+ +V+ G
Sbjct: 333 FGAITVLVCFISALISLAFAFIIIPRQVMPWTGLLLMYEWTSVTFFLLFGSYLRVVYNWG 392
Query: 391 IFSAIHV 371
SA HV
Sbjct: 393 SSSANHV 399
>01_06_1556 -
38222071-38222708,38222795-38222822,38222950-38223070,
38223206-38223318,38223424-38223506,38223868-38223930,
38224100-38224254,38224411-38224580,38225101-38225189,
38225304-38225496,38225655-38225779,38226069-38226475,
38226855-38226919,38227414-38227692,38227772-38227845,
38228241-38228292,38228366-38228473,38228871-38228972,
38229100-38229173,38229262-38229435,38229667-38229771,
38229867-38229977,38230364-38230487
Length = 1150
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 487 CRRESRVGGR*HQHSNKQSGRRQRQGKEHEKDQEENS 597
CRR R+ + + +K +G+R GKE E D NS
Sbjct: 129 CRRSKRLRCKPTRKRSKPTGKRDLGGKESEDDVFANS 165
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,380,899
Number of Sequences: 37544
Number of extensions: 332851
Number of successful extensions: 1038
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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