Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte15c09
(604 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 84 2e-17
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 33 0.042
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 31 0.098
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 31 0.17
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 26 4.9
SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyce... 26 4.9
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom... 26 4.9
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 25 6.4
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 25 6.4
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 83.8 bits (198), Expect = 2e-17
Identities = 29/58 (50%), Positives = 41/58 (70%)
Frame = +1
Query: 427 VLNQSGEEQVECPLCMEPLEVDDLHFYPCTCGYQICRFCWNRIXEGENGLCPACRKAY 600
+ + E+ + CPLCME +++ D +F PC CGY++CRFCW+ I E NG CPACR+ Y
Sbjct: 7 IYSSEDEDDMCCPLCMEEIDISDKNFKPCQCGYRVCRFCWHHIKEDLNGRCPACRRLY 64
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 32.7 bits (71), Expect = 0.042
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = +1
Query: 403 LALGSRMSVLNQSGEEQVECPLCMEPLEVDDLHFYPCTCGYQICRFCW----NRIXEGEN 570
L L S+ ++ +E + C +C E + D + C + CR C N +GEN
Sbjct: 692 LVLASKRKTVDIENQENIVCKICDEVAQ-DAIE---SRCHHTFCRLCVTEYINAAGDGEN 747
Query: 571 GLCPAC 588
CP+C
Sbjct: 748 VNCPSC 753
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = +1
Query: 430 LNQSGE-EQVECPLCMEPLEVD 492
+N +G+ E V CP C PL +D
Sbjct: 739 INAAGDGENVNCPSCFIPLSID 760
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 31.5 bits (68), Expect = 0.098
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +1
Query: 445 EEQVECPLCMEPLEV-DDLHFYPCT-CGYQICRFCWNRIXEGENGLCPACR 591
+E+ EC +CME ++ DD+ PC ++ C W R+ NG C CR
Sbjct: 391 DEEGECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRV----NGTCAICR 437
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 30.7 bits (66), Expect = 0.17
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 436 QSGEEQVECPLCMEPLEVDDLHFYPCTCGYQICRFC-WNRIXEGENGLCPACRK 594
Q ++ +ECP+C E L+ + CG+ C C N + E ++ CP CR+
Sbjct: 77 QKIKKTLECPICTEALQ----RPFTTHCGHTYCYECLLNWLKESKS--CPTCRQ 124
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 25.8 bits (54), Expect = 4.9
Identities = 8/28 (28%), Positives = 11/28 (39%)
Frame = +1
Query: 517 CGYQICRFCWNRIXEGENGLCPACRKAY 600
CG+ C C E + CP C +
Sbjct: 655 CGHAFCSNCMEPFYEHKTSTCPQCETPF 682
>SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 418
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 538 FCWNRIXEGENGLCPACRKAY 600
FC R EG LC AC AY
Sbjct: 383 FCVRRGPEGNKSLCNACGVAY 403
>SPBC2F12.13 |klp5|sot1|kinesin-like protein
Klp5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 883
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 565 RLLEYDSSKTDIFGIHMYTGRSGGRPLPRVP 473
+LL DSS D+ H+ T G P+P+VP
Sbjct: 788 QLLAEDSSTDDVSLPHLDTIDLDGSPVPKVP 818
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 6.4
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 9/55 (16%)
Frame = +1
Query: 463 PLCMEPLEVDDLHFYPCTCGYQICRF--------CWNRIXEGENGL-CPACRKAY 600
P+C + L + H + CGY C F + + ENG C CR+ Y
Sbjct: 143 PMCDKLLNFINGHIHCRKCGYIFCNFHSMYQIKLSIHATYDSENGFWCRVCRECY 197
Score = 25.0 bits (52), Expect = 8.5
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Frame = +1
Query: 424 SVLNQSGEEQVE-CPLCMEPLEVDDLHFYPCTCGYQICRFCWNRIXEGENG----LCPAC 588
S+++ + V+ CP C + + CG ICRFC I ++ +C +C
Sbjct: 268 SIVHWQDDSVVQICPECNNSFTLTRRRRHCRLCGRVICRFCVLEISLPQHPQPLLICMSC 327
Query: 589 RKAY 600
+ Y
Sbjct: 328 NQNY 331
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 25.4 bits (53), Expect = 6.4
Identities = 7/21 (33%), Positives = 16/21 (76%)
Frame = +1
Query: 439 SGEEQVECPLCMEPLEVDDLH 501
SG + V+CP+C + + ++D++
Sbjct: 2 SGPDHVQCPVCAKTVTMNDIN 22
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,431,155
Number of Sequences: 5004
Number of extensions: 47369
Number of successful extensions: 159
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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