Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15c08
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    28   1.4  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    27   3.2  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   5.6  
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    25   7.4  
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha...    25   7.4  
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch...    25   7.4  
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar...    25   7.4  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    25   7.4  
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    25   9.7  

>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 558 GLLQCSNGTILKPIIKDSQRREVDFYERMWASS 656
           G +  S GTIL   +   Q +  DF+  +W+SS
Sbjct: 199 GFMDVSTGTILGVTLAIFQWKYADFFHNVWSSS 231


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 274 LFKMQTTSDSFCN*YSIISAKLWK 203
           +F+ Q +SDS CN  SI S + W+
Sbjct: 205 VFESQNSSDSDCNFVSISSPEFWE 228


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 217  RIL*NINYKRNQRWFAF*IKIVILHIEKKMSFTPPVLK 330
            +IL N +Y+R++ +    IKI    +  K+ FT   LK
Sbjct: 938  KILMNYDYERDEVYLMIFIKIFQKCVHSKLQFTDATLK 975


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 121 SVFFFKVWIQSIIVNFSNQFLYLKFFLTICTIVGF 17
           S +FF V +  II+N   +     FF  I TI+ F
Sbjct: 95  STYFFNVLLPPIILNSGYELHQSNFFRNIGTILTF 129


>SPBC1348.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -3

Query: 312 KTHFFFNM*NDDLYLKCKPPLIPFVINIL*YPQSYGNFVITI-VIYNHLLT 163
           K  FF  M N  +++ C  P++ ++ NI+     +GNF   + VI   L T
Sbjct: 264 KARFFRRMLNAFIFIFCASPMLHYLSNII-----FGNFDYRLSVIIGDLFT 309


>SPBPB2B2.19c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -3

Query: 312 KTHFFFNM*NDDLYLKCKPPLIPFVINIL*YPQSYGNFVITI-VIYNHLLT 163
           K  FF  M N  +++ C  P++ ++ NI+     +GNF   + VI   L T
Sbjct: 264 KARFFRRMLNAFIFIFCASPMLHYLSNII-----FGNFDYRLSVIIGDLFT 309


>SPAC977.01 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1||Partial|Manual
          Length = 316

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -3

Query: 312 KTHFFFNM*NDDLYLKCKPPLIPFVINIL*YPQSYGNFVITI-VIYNHLLT 163
           K  FF  M N  +++ C  P++ ++ NI+     +GNF   + VI   L T
Sbjct: 236 KARFFRRMLNAFIFIFCASPMLHYLSNII-----FGNFDYRLSVIIGDLFT 281


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -3

Query: 312 KTHFFFNM*NDDLYLKCKPPLIPFVINIL*YPQSYGNFVITI-VIYNHLLT 163
           K  FF  M N  +++ C  P++ ++ NI+     +GNF   + VI   L T
Sbjct: 264 KARFFRRMLNAFIFIFCASPMLHYLSNII-----FGNFDYRLSVIIGDLFT 309


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +3

Query: 438 IEKRNDELMTKPLALQKGLEIQAYDLQVAGHRKTEDTKYSGLLQCSNGTI 587
           + ++  +L  + LAL   +    Y + +    +TED  Y  L  C NG +
Sbjct: 54  LNEKQKKLQARELALHARVSSHPYIITLHRVLETEDAIYVVLQYCPNGDL 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,816,070
Number of Sequences: 5004
Number of extensions: 59149
Number of successful extensions: 137
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)