Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15c06
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0612 + 5378190-5378251,5378926-5379244,5379381-5379671,538...    28   7.2  
02_05_0703 - 31056806-31056817,31058329-31058531,31058638-31058908     27   9.6  
02_05_0488 + 29448430-29448526,29448649-29448756,29448855-294490...    27   9.6  

>08_01_0612 +
           5378190-5378251,5378926-5379244,5379381-5379671,
           5380520-5380768,5380843-5380967,5381487-5381585,
           5381668-5382352
          Length = 609

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 186 VSARGFPERRAEKTQALQARKEPKVREVQRDCKGKCATSI 305
           + ARG+P  +  K   L   K P+ +E   +  G CA  +
Sbjct: 483 MEARGYPADKKAKNILLSLAKTPEEQEEANELTGNCAIQL 522


>02_05_0703 - 31056806-31056817,31058329-31058531,31058638-31058908
          Length = 161

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +3

Query: 219 EKTQALQARKEPKVREVQR 275
           E T+A+QARKE KVR+ Q+
Sbjct: 91  EVTKAVQARKEEKVRKAQQ 109


>02_05_0488 +
           29448430-29448526,29448649-29448756,29448855-29449000,
           29449109-29449319,29449752-29449989,29450098-29450248,
           29450353-29450682
          Length = 426

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 160 FWCCYYWLWCQRGVFRRGGRKKLR 231
           F+C Y W W +R   RR   + LR
Sbjct: 56  FYCVYCWRWRKRNAVRRAQIESLR 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,043,086
Number of Sequences: 37544
Number of extensions: 186313
Number of successful extensions: 487
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)