Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15c03
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.07c |vps28||ESCRT I complex subunit Vps28|Schizosaccharo...    68   8e-20
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    29   0.67 
SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces po...    29   0.89 
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    26   4.7  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   8.3  
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p...    25   8.3  
SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc...    25   8.3  
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    25   8.3  

>SPAC1B3.07c |vps28||ESCRT I complex subunit
           Vps28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 67.7 bits (158), Expect(2) = 8e-20
 Identities = 30/107 (28%), Positives = 62/107 (57%), Gaps = 1/107 (0%)
 Frame = +2

Query: 227 NAREREKHDNMAELYAVVCTLQHLEKAYMRDCVRAQEYTAACSRLLVQYKVAFKQVQADE 406
           + + ++  ++++ LY+++  L+ LEKA+ +D V   ++ + C  L+ Q++  F   +  +
Sbjct: 21  HTKNQQVREDLSILYSILVALEQLEKAFTKDAVSTSDFNSTCELLIQQWESCFSDERVTQ 80

Query: 407 -FPNIEAFVAKYRLDCPAALERIRENKPNLIKDDKGNTNKYIAEIVS 544
            F + E F +KYRL CP A++RI+E     I D++  +N   +  +S
Sbjct: 81  AFGSFEDFCSKYRLQCPRAIKRIQEG----ISDERSQSNSTFSNAIS 123



 Score = 44.8 bits (101), Expect(2) = 8e-20
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
 Frame = +2

Query: 521 KYIAEIVSLFITLMDKLRLEFRAMDMIQPELRDLRDTMDRLS-MLPDDFEGKLKVQEWLD 697
           K IA +V  FIT +D +RL F A D + P L +L  +MD L+  L      + K+ +WL 
Sbjct: 155 KSIAGLVQNFITTLDAIRLNFIAKDQLHPLLSELIVSMDDLTESLKIQVSCRNKLVQWLI 214

Query: 698 KLSEMSASD 724
           K++ M+ +D
Sbjct: 215 KINNMNITD 223


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -3

Query: 440 CI*QQKLQYWETHQPVLV*KPLCTARGDDCMPPCIPVLAHNHACMP 303
           C  Q+K ++ +   P     P    RG DC  PC P+L H   C P
Sbjct: 261 CGKQEKPEFVKNLVPHSCGDPCGKTRGQDCEHPC-PLLCHPGPCPP 305


>SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 295

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 20/50 (40%), Positives = 28/50 (56%)
 Frame = -2

Query: 549 NNDTISAMYLLVFPLSSLMRFGLFSLIRSKAAGQSNLYLATKASILGNSS 400
           +NDT S   ++  PLS      LFSL+RSK   +  LYL T  ++L  S+
Sbjct: 217 SNDTQSCKLIVSLPLSQEECEVLFSLLRSK---KEPLYLNTLLALLVESN 263


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 246 SMITWLSSMLSSVPFSTW 299
           +M+ W  S  S+VPFS+W
Sbjct: 419 NMVFWSKSSSSTVPFSSW 436


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 382 SHFVLHEETTACRRVFLCSHTITHVCLLQVLKGTDDSIEL 263
           S+F L++E   CRR+  C+H     C+ Q L  + +S  L
Sbjct: 530 SNFELNDE---CRRLKQCNHFFHRECIDQWLTSSQNSCPL 566


>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 407 FPNIEAFVAKYRLDCPAALERIRE 478
           +PN    +  + +DCPA+L  + E
Sbjct: 85  YPNSNVILLCFSIDCPASLNNVTE 108


>SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 349

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -2

Query: 246 FSRSRAFLYNLISSYNSGRVSCIFIISSQIYXXXXXXXXXXHEKP 112
           F     FLY L  SY    +  IF+I+ Q++           +KP
Sbjct: 152 FMVKNEFLYRLSPSYICSIIDWIFVIAQQLHIDFASFEFKILKKP 196


>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 434 KYRLDCPAALERIRENKPNLIKDDKGNTNKYIAE 535
           K  LD  +A + +++NK N ++  + N +KYI E
Sbjct: 142 KSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,829,985
Number of Sequences: 5004
Number of extensions: 57848
Number of successful extensions: 197
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)