Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte15c03
(724 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0927 + 33082645-33083286 125 4e-29
12_01_0590 - 4813764-4814401,4814785-4814872,4815176-4815376,481... 36 0.043
07_03_0696 - 20754773-20754821,20754930-20755028,20755107-207552... 29 2.8
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 29 3.7
04_04_0561 - 26250488-26251451,26251499-26251620 29 4.9
09_04_0151 - 15154063-15154296,15155616-15155660,15155749-151558... 28 6.5
>01_06_0927 + 33082645-33083286
Length = 213
Score = 125 bits (301), Expect = 4e-29
Identities = 72/184 (39%), Positives = 105/184 (57%), Gaps = 12/184 (6%)
Frame = +2
Query: 209 EIKLYKNAREREKHDNMAELYAVVCTLQHLEKAYMRDCVRAQEYTAACSRLLVQYKVAFK 388
E+KL+ + RERE +++A+LYA++ + LE+AY+RD V A +Y A C +L+ Q+
Sbjct: 2 EVKLWNDKRERELLESLADLYAIIKATEKLERAYVRDLVSAADYEAECLKLISQFNSLSS 61
Query: 389 QVQADEFPNIEAFVAKYRLDCPAALER-IRENKPNLIK----------DDKGNTNKYIAE 535
+ I FV YRLDCPAAL R ++ P ++ + IA+
Sbjct: 62 SLAG--VVTIPRFVEAYRLDCPAALNRLVQSGVPATVELRAAASSSAPASSAASAAAIAQ 119
Query: 536 IVSLFITLMDKLRLEFRAMDMIQPELRDLRDTMDRLS-MLPDDFEGKLKVQEWLDKLSEM 712
V FIT MD ++L A D ++P L DL +M +L +LP DFEGK+KV EWL KL++M
Sbjct: 120 CVQSFITAMDAVKLNMLANDQVRPLLHDLSTSMGKLGPVLPPDFEGKVKVSEWLAKLNKM 179
Query: 713 SASD 724
A D
Sbjct: 180 GAGD 183
>12_01_0590 -
4813764-4814401,4814785-4814872,4815176-4815376,
4816803-4816830,4817136-4817339,4817352-4819136,
4820358-4821139
Length = 1241
Score = 35.5 bits (78), Expect = 0.043
Identities = 20/69 (28%), Positives = 40/69 (57%)
Frame = +2
Query: 509 GNTNKYIAEIVSLFITLMDKLRLEFRAMDMIQPELRDLRDTMDRLSMLPDDFEGKLKVQE 688
G N ++++ +L KLR + + ++ ELR +R +++L+ + D+ +G+ K E
Sbjct: 7 GAINSLLSKLAALMGEEYGKLRGVRKEVASLEDELRSMRALLEKLAAM-DELDGQAK--E 63
Query: 689 WLDKLSEMS 715
W D++ EMS
Sbjct: 64 WRDQVREMS 72
>07_03_0696 -
20754773-20754821,20754930-20755028,20755107-20755226,
20755317-20755402,20756013-20756109,20756181-20756268,
20756358-20756454,20756797-20756892,20757029-20757125,
20757571-20757689,20758559-20758616,20758751-20758857
Length = 370
Score = 29.5 bits (63), Expect = 2.8
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = +2
Query: 269 YAVVCTLQHLEKAYMRDCVRAQEYTAACSRLLVQYKVAFKQVQADEF-----PNIEAFVA 433
+AVVC + +LE Y+RD A E+ A R ++ + K+V D + P+ +
Sbjct: 296 WAVVCDVWYLEPQYLRDGETAIEF-AERVRDMIAARAGLKKVPWDGYLKHNRPSPKHTEE 354
Query: 434 KYRLDCPAALERIREN 481
K R+ + L R+ E+
Sbjct: 355 KQRIFADSVLRRLEES 370
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +3
Query: 255 TWLSSMLSSVPFSTWRRHTCVIVCEHRNTRRHAVVSSCSTKWL 383
T L+ LSSV W + +C+HR VS+ +W+
Sbjct: 2300 TQLTGKLSSVQLPPWAENPVDFICKHRKALESDYVSAHLHEWI 2342
>04_04_0561 - 26250488-26251451,26251499-26251620
Length = 361
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +3
Query: 255 TWLSSMLSSVPFSTWRRHTCVIVCEHRNTRRHAVVSSCST 374
TW +S++ S P TW+R C+ R + +S T
Sbjct: 12 TWTTSLILSTPSHTWQRSLCLPASRSFTPRTREIPTSPPT 51
>09_04_0151 - 15154063-15154296,15155616-15155660,15155749-15155820,
15155932-15156024,15156282-15156351,15156716-15156912,
15156946-15157215,15158620-15158757,15158841-15158930,
15159041-15159247,15159987-15160154,15160300-15160503,
15160584-15160670,15160748-15160861,15161689-15161835,
15161914-15162063,15162211-15162276,15162376-15162480,
15162625-15162798,15162930-15163154,15163534-15163590,
15163858-15164019,15164234-15164302,15164391-15164471,
15164823-15164925,15165011-15165156,15165285-15165359,
15165441-15165508,15165586-15165667,15165745-15165858,
15166358-15166476,15166692-15166781,15166862-15166988
Length = 1382
Score = 28.3 bits (60), Expect = 6.5
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +2
Query: 464 ERIRENKPNLIKDDKGNTNKYIAEIVSLFITLMDKLRLEFRAMDMI--QPELRDLRDTMD 637
ER+ + + N+ D N N+ +++S+ DKL E + M+ + + EL + T+D
Sbjct: 1219 ERLLKKERNI--DTGVNENELHQQLLSI-TEERDKLLSEIKYMNSVINESELIQAKATID 1275
Query: 638 RLSMLPDDFEGKLKVQEWL 694
LS E K+K WL
Sbjct: 1276 ELSSRISIVEAKMKNSYWL 1294
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,803,553
Number of Sequences: 37544
Number of extensions: 367808
Number of successful extensions: 986
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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