Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15c02
         (242 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical pr...    28   1.0  
Z70682-7|CAA94585.2|  531|Caenorhabditis elegans Hypothetical pr...    25   5.4  
AF026215-3|AAB71323.3|  563|Caenorhabditis elegans Hypothetical ...    25   7.1  

>Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical
           protein ZC15.5 protein.
          Length = 597

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +1

Query: 94  ALLLYILYSLAVVST-TFNCSRIEHLSSATMKTRSSRTFENKC 219
           A L+++L+   V+ST +   SRIEH  + T +TR+  T   +C
Sbjct: 527 APLVHLLHFCDVLSTISLQFSRIEHTHAWTCQTRAPTTIILRC 569


>Z70682-7|CAA94585.2|  531|Caenorhabditis elegans Hypothetical
           protein F08G5.5 protein.
          Length = 531

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 100 LLYILYSLAVVSTTFNCSRIEHLSSATMKTRS 195
           L+ I++ LA   TT NCSRI  L+    K+ +
Sbjct: 7   LITIIFLLAHFLTTSNCSRILFLNMFNSKSHA 38


>AF026215-3|AAB71323.3|  563|Caenorhabditis elegans Hypothetical
           protein F09G2.5 protein.
          Length = 563

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +1

Query: 91  CALLLYILYSLAVVSTTFNCSRIEHLSSATMKTRSSRTFE 210
           CA L  ++ ++ + ST  N  +I+H  +   + + +R  E
Sbjct: 6   CATLFIVIINVHLTSTQLNIRKIQHNDNTRRQQQRNRKSE 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,307,843
Number of Sequences: 27780
Number of extensions: 87692
Number of successful extensions: 169
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 12,740,198
effective HSP length: 60
effective length of database: 11,073,398
effective search space used: 221467960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)