Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15c02
         (242 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   1.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    20   3.8  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    20   3.8  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          19   6.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      19   6.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    19   6.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    19   6.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 1.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 160 QFVSN*MLC*PPLSYRGYREEVH 92
           Q + N  L  PP     YR+EVH
Sbjct: 53  QVLPNGNLVFPPFRAEDYRQEVH 75


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.2 bits (40), Expect = 3.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 213 IFECSTTSSFHG 178
           I +CSTTSS  G
Sbjct: 423 ISDCSTTSSLSG 434


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
          factor 2 protein.
          Length = 690

 Score = 20.2 bits (40), Expect = 3.8
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = -2

Query: 34 HYTHYHV 14
          HY HYH+
Sbjct: 7  HYQHYHI 13


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 223 FRIYFRMFDYF 191
           +RIY R+ DY+
Sbjct: 419 YRIYKRIIDYY 429


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 223 FRIYFRMFDYF 191
           +RIY R+ DY+
Sbjct: 419 YRIYKRIIDYY 429


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -3

Query: 240 FFLRVNFAFIF 208
           FF+ ++FAFIF
Sbjct: 278 FFVFLSFAFIF 288


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 239 FFYELISHLFSNVRLL 192
           F  + I+H+F + RLL
Sbjct: 220 FRIDAINHMFEDARLL 235


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,185
Number of Sequences: 438
Number of extensions: 1002
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4149981
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)