Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15c01
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator Dap1|Sch...   103   2e-23
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    29   0.77 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   1.8  
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     27   1.8  
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe...    27   2.3  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    26   4.1  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.4  
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo...    26   5.4  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    25   9.5  
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.5  
SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom...    25   9.5  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    25   9.5  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   9.5  
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3...    25   9.5  

>SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator
           Dap1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 166

 Score =  103 bits (248), Expect = 2e-23
 Identities = 53/123 (43%), Positives = 77/123 (62%), Gaps = 5/123 (4%)
 Frame = +3

Query: 207 KDLTVAELKKYDGTQPDGRVLLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQ 386
           +D T AELK+Y+G++ +  V LA+ G +++VT G +FYGP GPYSAFAG DA+RGLA   
Sbjct: 41  RDYTPAELKEYNGSK-NSLVFLAIKGTVYNVTMGSKFYGPQGPYSAFAGHDASRGLAKNS 99

Query: 387 -----VAASENDEYDDVSDLGSDEIASAKEWEEQFREKYDIVGRLLKLGETPKNYSDDES 551
                +  S+ +E DD SDL  +E  +  +W+  F +KY  VGRL+   E     +  E+
Sbjct: 100 FDDEFIPDSDAEELDDCSDLNDEERQALNDWKAFFDQKYQAVGRLISPREARAAATISET 159

Query: 552 EDK 560
           E+K
Sbjct: 160 EEK 162


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +3

Query: 249 QPDGRVLLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATG 383
           Q   R L+ +NG++ D+T  +   G G   SAF GKDAT     G
Sbjct: 369 QSKTRPLVLINGVVHDMTGFEHPGGQGLLRSAF-GKDATAAFNGG 412


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 20/67 (29%), Positives = 28/67 (41%)
 Frame = +3

Query: 369 GLATGQVAASENDEYDDVSDLGSDEIASAKEWEEQFREKYDIVGRLLKLGETPKNYSDDE 548
           G + G+++  E DEYDD     SDE+ S     E   E  D      K  E      + E
Sbjct: 354 GKSQGEISEQEEDEYDDAE---SDEMHSPYSTHEPESEPEDQDEPSEKDDENKDVEEEQE 410

Query: 549 SEDKKSQ 569
            E ++ Q
Sbjct: 411 QEQEEEQ 417


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -2

Query: 596 QTSIPRICLL*FFVFALIITVIFWRFTQFEEAT 498
           + S+ R  LL F+V  L+   ++W+ T +E ++
Sbjct: 68  EKSLKRYALLSFYVIILLAIPVWWKTTHYERSS 100


>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
 Frame = +3

Query: 282 GIIFDVTRGKRFYGPGGPYSAFAGKDATR-GLATGQVAASENDEYDDV-SDLGSDEIASA 455
           GII D+ + K+F G G  ++  AG   T   LA  Q    +      V S++ S EI   
Sbjct: 51  GIITDLIKSKKFGGKGVLFAGGAGTGKTALALAIAQELGPKVPFCPMVGSEVYSSEIKKT 110

Query: 456 KEWEEQFREKYDIVGRLLKLGETPKNYSDDESE 554
           +   E FR     +G  L++ ET + Y  + +E
Sbjct: 111 EALMENFRR---AIG--LRVKETKEVYEGEVTE 138


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = -3

Query: 463 HSLAEAISSEPRSLTSSYSSFSDAATC-PVAKPLVASLPANAEYXXXXXXXXXXLVTSNI 287
           H L EA   + +S  +  S+   +    P+ KP+ A++PA + Y           +  ++
Sbjct: 88  HKLTEAREGKLKSHATGLSTQKTSTLARPIQKPIEATIPAPSPYLFSEPLPSISSLDLDV 147

Query: 286 IPFTAK 269
           +  TA+
Sbjct: 148 LRLTAR 153


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 448 AISSEPRSLTSSYSSFSDAATCPVAKPLVASLPANAEY 335
           A  SE  S +S  SS+SD AT  +        P ++EY
Sbjct: 91  ATPSETNSYSSPVSSYSDPATSQLPSSTSFFSPTSSEY 128


>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 651

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = -3

Query: 517 PNLRRRPTMSYFSLNCSSHSLAEAISSEPRSLTSS 413
           PN+R   T+S  +  CS  S +++I++EP S+ +S
Sbjct: 595 PNVRIFDTVSNRNWICSIPSHSDSIAAEPNSVPTS 629


>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 454 AEAISSEPRSLTSSYSSFSDAATCPVAKPLVAS 356
           AE +    RSL  SY+ FS +   P ++ L+A+
Sbjct: 4   AEQVHQSLRSLVLSYAHFSPSILIPASQYLLAA 36


>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 384 QVAASENDEYDDVSDLGSDEIASAKEWEEQ 473
           Q  +SE+D    +SD   DE  SA E +E+
Sbjct: 218 QSCSSESDRVSQISDDEEDEEGSADEEDEE 247


>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/48 (22%), Positives = 22/48 (45%)
 Frame = +3

Query: 27  QHVYKMADETNSLTVWDELTSPLNLVLIGVIVYLIYKIIKSNFESEAN 170
           +H Y++  +   L VW E        ++G++ Y+   + K  F   A+
Sbjct: 73  EHGYRVGQKLVELVVWRERNPKRETRILGILQYIHSSVWKYLFGKHAD 120


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 344 RRVWASRSIKSLASSNIKYNSIHSQKNSS 258
           R+ WA+ + K+LAS  +  N   ++KN S
Sbjct: 769 RKTWANLNSKTLASFELLNNLTEARKNFS 797


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = -3

Query: 502  RPTMSYFSLNCSSHSLAEAISSEPRSLTSSYSSFSDAATCPVAKPLVASLPANAEY 335
            +PT  + + N  S S +   SS     T+SYSS     +  +   L +S+   + Y
Sbjct: 887  KPTFKFSTSNSGSTSYSIPSSSSRNEGTTSYSSNITVTSSTLKPSLTSSVSTASSY 942


>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 555

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 472 SLGKNTT*LVASSNWVKRQKITVMMRAKTKNH 567
           SLG +TT L+A+ N+V   +  +     T+NH
Sbjct: 293 SLGTSTTALMATQNYVCSPEYHMFAHPVTQNH 324


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,397,461
Number of Sequences: 5004
Number of extensions: 44548
Number of successful extensions: 179
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)