Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15b14
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    29   0.64 
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    29   0.84 
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    28   1.1  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    27   2.6  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    27   2.6  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    27   2.6  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    26   4.5  
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    26   4.5  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    26   4.5  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    25   7.9  

>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 16/67 (23%), Positives = 30/67 (44%)
 Frame = +3

Query: 267 ENHYNATHRYSCAQCKKVLPSPHFLDLHIQENHDSYFAVMAEKKPSYCCYIEECKQKFNN 446
           +NH    H  SC+ C +   +   L  H+  +  +      E++ +Y C +E CK+ F  
Sbjct: 195 QNHIREAHVPSCSICGRQFKTAAHLRHHVVLHQTTL-----EERKTYHCPMEGCKKSFTR 249

Query: 447 TADRLDH 467
           ++    H
Sbjct: 250 SSALKKH 256


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 492 KDFRFERQKKDKNKMPNAMDVDEAKSNKFHLNNSKQKTFSKNKYAGKKFTSDKKS 656
           KD    R+K  K +  +A  ++ + S+K HL+ S  + FSK+    +     KKS
Sbjct: 581 KDIERRREKVAKKRNSSASKLEMSDSSKHHLSRSSSR-FSKSHIISQLHNHLKKS 634


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = +3

Query: 174 DVDDGNYNTQFKQTPCS---IPGCKHIADTL 257
           DV D  Y ++ + TPCS   +PGC    D L
Sbjct: 377 DVMDSQYGSKIEDTPCSLHNVPGCFSCFDRL 407


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 486 IPKDFRFERQKKDKNKMPNAMDVDEAKSNKFHLNNSKQKTFSKNKYAG-KKFTSDKKSR 659
           + + F+    K  +N   + ++     ++KFH  + ++K+F    YAG +KF  D   R
Sbjct: 10  VTRGFKGLESKSVENNKDHIVENSSPIASKFHEFDEQKKSFEIINYAGHEKFVDDITER 68


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
 Frame = +3

Query: 219 CSIPGCKHIADTLLDYENHYNATHR----YSCAQCKKVLPSPHFLDLHIQENHDSYFAVM 386
           C+ P C   + T  ++   +  TH     +SC+ C +       L+ H+Q+ H     + 
Sbjct: 28  CTYPDCPK-SFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQQMHLQKQNLS 86

Query: 387 AEKKPSYCCYIEEC 428
             +  +  C++  C
Sbjct: 87  ERRMLNASCFLGFC 100


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 8/112 (7%)
 Frame = +3

Query: 219  CSIPGCKHIADTLLDYENHYNATHR-YSC-------AQCKKVLPSPHFLDLHIQENHDSY 374
            C   GC     +L ++  H    H   SC       A C  VLPS  F ++H++ + ++ 
Sbjct: 1002 CQWEGCLANLHSLENFIKHVLLLHHPKSCSVVKCLWASCDMVLPSEEF-EMHLRGHLNNI 1060

Query: 375  FAVMAEKKPSYCCYIEECKQKFNNTADRLDHCVREHRIPKDFRFERQKKDKN 530
                        C +  CK+ F+N  D   H    H +P  F  E   K +N
Sbjct: 1061 ---------RLNCEVSNCKKCFSNYEDMFKHLQHSH-LPFKFTPESFIKIRN 1102


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +3

Query: 474  REHRIPKDFRFERQKKDKNK-MPNAMDVDEAKSNKFHLNNSKQKTFSKNKYAGKKFTSDK 650
            R H++ + F F R KKD  K +P+ ++    K  K  L+  + K + + K  G  F   +
Sbjct: 1084 RLHKVLRPFLFRRLKKDVEKELPDKVE----KVIKCPLSGLQLKLYQQMKKHGMLFVDGE 1139

Query: 651  KSR 659
            K +
Sbjct: 1140 KGK 1142


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 19/75 (25%), Positives = 35/75 (46%)
 Frame = +3

Query: 450 ADRLDHCVREHRIPKDFRFERQKKDKNKMPNAMDVDEAKSNKFHLNNSKQKTFSKNKYAG 629
           A++ +  + E  +PKD   E+  KDK K       ++ K     +++S      K + AG
Sbjct: 182 AEQAEEEILEKPVPKDEVAEKHSKDKLKKE-----EKEKKTAVDVSDSVNGKKRKTEPAG 236

Query: 630 KKFTSDKKSRG*NKY 674
           +   ++KKS+    Y
Sbjct: 237 EGEQTEKKSKSTKTY 251


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -3

Query: 426 ILLCSSNTKVSFRPSQQNTNRGSPVCAGLRNAAKAEPSCI--ERTSTCASR 280
           I  C+  +  +     ++ N GS  C+   ++   +PSC   E+ S C+S+
Sbjct: 201 ICACTGKSLWTEHAELKSVNEGSSCCSKKDSSPSEKPSCCSQEKKSCCSSK 251


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/55 (23%), Positives = 24/55 (43%)
 Frame = +3

Query: 516 KKDKNKMPNAMDVDEAKSNKFHLNNSKQKTFSKNKYAGKKFTSDKKSRG*NKYGL 680
           KK++  +        +KS+     ++     +      KK+TSD+K R  +K  L
Sbjct: 157 KKEQEDLIQNSATSHSKSDNLDSESADDSDLADESELSKKYTSDRKIRNASKKAL 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,101,062
Number of Sequences: 5004
Number of extensions: 69598
Number of successful extensions: 255
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)