Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte15b11
(249 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0517 + 16712487-16712570,16713715-16714059,16714149-167143... 27 1.6
03_05_0755 - 27462388-27463140 27 1.6
10_01_0206 - 2206359-2209142 27 2.1
02_05_0796 + 31800256-31800528,31800635-31800758,31802642-318027... 27 2.1
09_01_0093 - 1360596-1360625,1363562-1364266 27 2.8
10_02_0099 - 5295513-5296400 26 4.8
08_02_0805 + 21400345-21400701,21400797-21400975,21401223-214012... 26 4.8
01_05_0285 - 20382305-20382563,20383315-20384504 26 4.8
12_02_0982 - 25031778-25032122,25032388-25032534,25032693-250337... 25 6.4
06_03_0900 - 25789327-25789662 25 6.4
06_01_0057 - 483710-484309 25 8.5
>04_03_0517 +
16712487-16712570,16713715-16714059,16714149-16714301,
16714889-16714972,16715426-16715479,16715552-16715647,
16716163-16716258,16716941-16717086,16717650-16717799,
16717889-16718018,16718128-16718787,16718881-16718979,
16719058-16719210,16719323-16720054,16720338-16720640
Length = 1094
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 20 QCRAEVAETSHARMAPPVKTTATAMPTAPIVHQRQETAANGH--LKETFENDP 172
+C A +A+T ++A +PT +++ + N H L++ +EN P
Sbjct: 708 ECNAVIAQTREGKIARLESLMDGTLPTEEFINEEYLSLMNEHKILQQKYENHP 760
>03_05_0755 - 27462388-27463140
Length = 250
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 32 EVAETSHARMAPPVKTTATAMPTAPIVHQRQETAANG-HLKETFEN 166
E+A R PP +A A P+ VH QE AA G H ++ F++
Sbjct: 133 ELAGRLARRPCPPAGRSAAA-PSVRRVHSAQELAAGGGHSRQCFDD 177
>10_01_0206 - 2206359-2209142
Length = 927
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = -3
Query: 100 SWHRSCSRLYRWR--HPCMTRLRNLRTALL 17
SW C + +R H C T L+NL T +L
Sbjct: 340 SWELFCKKAFRREANHECPTELKNLATQML 369
>02_05_0796 +
31800256-31800528,31800635-31800758,31802642-31802771,
31804336-31804414,31804848-31805133,31805273-31805385
Length = 334
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 41 ETSHARMAPPVKTTATAMPTAPIVHQRQETAANGHL 148
ET+ A+ APPV +A A PT + +N L
Sbjct: 295 ETTGAQSAPPVSASAAATPTTDSKEASKTVESNSDL 330
>09_01_0093 - 1360596-1360625,1363562-1364266
Length = 244
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Frame = +2
Query: 35 VAETSHARMAPPVKTTATA---MPTAPIVHQRQETAAN 139
+ HA AP V+ TAT P AP QRQE ++
Sbjct: 203 IGNQQHASNAPSVQPTATVYAPAPVAPSSAQRQERTSD 240
>10_02_0099 - 5295513-5296400
Length = 295
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 47 SHARMAPPVKTTATAMPTAPIVHQRQETAANGHLK 151
S + PP T + P A ++ TAA GH+K
Sbjct: 167 SRSSSKPPTPTKTASAPAAADHAKKANTAAAGHVK 201
>08_02_0805 +
21400345-21400701,21400797-21400975,21401223-21401271,
21401310-21401390,21401988-21402605
Length = 427
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -3
Query: 106 RSSWHRSCSRLYRWRHP 56
R+ W RSC R RW P
Sbjct: 338 RARWRRSCDRRRRWGWP 354
>01_05_0285 - 20382305-20382563,20383315-20384504
Length = 482
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 162 KTTRFVFKDSGCILYDYG 215
K T+ V ++ GC YDYG
Sbjct: 3 KKTKLVEEEDGCYYYDYG 20
>12_02_0982 -
25031778-25032122,25032388-25032534,25032693-25033718,
25033758-25034227,25034393-25034471
Length = 688
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 20 QCRAEVAETSHARMAPPVKTTATAMPTA 103
+ RA V ++ ARM PP T A P A
Sbjct: 74 EARARVVASAVARMKPPRATVTHATPAA 101
>06_03_0900 - 25789327-25789662
Length = 111
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 26 RAEVAETSHARMAPPVKTTATAMPTAPIVHQRQETAAN 139
R A +S A MA + A A PT+ + RQ TAA+
Sbjct: 55 RRRCATSSGAAMATDLGPAAAATPTSSGLDLRQATAAS 92
>06_01_0057 - 483710-484309
Length = 199
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/34 (26%), Positives = 15/34 (44%)
Frame = +2
Query: 23 CRAEVAETSHARMAPPVKTTATAMPTAPIVHQRQ 124
CR A S + + PP P+ P+V + +
Sbjct: 137 CRKRAASVSSSSLVPPALIKVQLPPSRPVVDEEE 170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,147,304
Number of Sequences: 37544
Number of extensions: 88476
Number of successful extensions: 349
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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