Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15b08
         (525 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ178242-1|ABA18181.1|  578|Caenorhabditis elegans Frizzled homo...    56   2e-08
AF016413-2|ABA54421.1|  578|Caenorhabditis elegans Caenorhabditi...    56   2e-08
AF016413-1|ABA54422.1|  550|Caenorhabditis elegans Caenorhabditi...    56   2e-08
AB026113-1|BAA84678.1|  550|Caenorhabditis elegans Cfz2 protein.       56   2e-08
Z81128-1|CAB03398.1|  568|Caenorhabditis elegans Hypothetical pr...    47   9e-06
AF013953-1|AAC47750.1|  568|Caenorhabditis elegans mom-5 protein.      47   9e-06
U43316-1|AAC46993.1|  525|Caenorhabditis elegans transmembrane r...    38   0.004
AC006736-2|AAF60493.1|  529|Caenorhabditis elegans Abnormal cell...    38   0.004
AC006736-1|AAF60492.1|  525|Caenorhabditis elegans Abnormal cell...    38   0.004
AC084197-27|AAG23467.2|  314|Caenorhabditis elegans Hypothetical...    33   0.17 
U63557-1|AAC47301.1|  558|Caenorhabditis elegans transmembrane r...    32   0.22 
AC024201-2|AAK82924.1|  556|Caenorhabditis elegans Abnormal cell...    32   0.22 
AC024201-1|AAF36028.1|  558|Caenorhabditis elegans Abnormal cell...    32   0.22 
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e...    29   2.0  
U55363-2|AAA97961.3|  357|Caenorhabditis elegans Serpentine rece...    28   3.6  

>DQ178242-1|ABA18181.1|  578|Caenorhabditis elegans Frizzled homolog
           protein.
          Length = 578

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 20/34 (58%), Positives = 29/34 (85%)
 Frame = +2

Query: 422 QQPRCQDITIPMCRGIGYNLTSFPNALDHDTQEE 523
           ++ +C+ ITIP+C+GIGYN+TSFPN+  H+ QEE
Sbjct: 21  KRQKCEQITIPLCKGIGYNMTSFPNSYGHEKQEE 54


>AF016413-2|ABA54421.1|  578|Caenorhabditis elegans Caenorhabditis
           frizzled homologprotein 2, isoform a protein.
          Length = 578

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 20/34 (58%), Positives = 29/34 (85%)
 Frame = +2

Query: 422 QQPRCQDITIPMCRGIGYNLTSFPNALDHDTQEE 523
           ++ +C+ ITIP+C+GIGYN+TSFPN+  H+ QEE
Sbjct: 21  KRQKCEQITIPLCKGIGYNMTSFPNSYGHEKQEE 54


>AF016413-1|ABA54422.1|  550|Caenorhabditis elegans Caenorhabditis
           frizzled homologprotein 2, isoform b protein.
          Length = 550

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 20/34 (58%), Positives = 29/34 (85%)
 Frame = +2

Query: 422 QQPRCQDITIPMCRGIGYNLTSFPNALDHDTQEE 523
           ++ +C+ ITIP+C+GIGYN+TSFPN+  H+ QEE
Sbjct: 21  KRQKCEQITIPLCKGIGYNMTSFPNSYGHEKQEE 54


>AB026113-1|BAA84678.1|  550|Caenorhabditis elegans Cfz2 protein.
          Length = 550

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 20/34 (58%), Positives = 29/34 (85%)
 Frame = +2

Query: 422 QQPRCQDITIPMCRGIGYNLTSFPNALDHDTQEE 523
           ++ +C+ ITIP+C+GIGYN+TSFPN+  H+ QEE
Sbjct: 21  KRQKCEQITIPLCKGIGYNMTSFPNSYGHEKQEE 54


>Z81128-1|CAB03398.1|  568|Caenorhabditis elegans Hypothetical
           protein T23D8.1 protein.
          Length = 568

 Score = 46.8 bits (106), Expect = 9e-06
 Identities = 18/31 (58%), Positives = 22/31 (70%)
 Frame = +2

Query: 431 RCQDITIPMCRGIGYNLTSFPNALDHDTQEE 523
           +C+ ITIPMC+ + YN T FPN L H TQ E
Sbjct: 36  KCEHITIPMCKNLDYNQTVFPNLLGHTTQSE 66


>AF013953-1|AAC47750.1|  568|Caenorhabditis elegans mom-5 protein.
          Length = 568

 Score = 46.8 bits (106), Expect = 9e-06
 Identities = 18/31 (58%), Positives = 22/31 (70%)
 Frame = +2

Query: 431 RCQDITIPMCRGIGYNLTSFPNALDHDTQEE 523
           +C+ ITIPMC+ + YN T FPN L H TQ E
Sbjct: 36  KCEHITIPMCKNLDYNQTVFPNLLGHTTQSE 66


>U43316-1|AAC46993.1|  525|Caenorhabditis elegans transmembrane
           receptor protein.
          Length = 525

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +2

Query: 431 RCQDITIPMCRGIGYNLTSFPNALDHDTQEE 523
           RCQ +   MC  + YNLTSFPN +D ++ ++
Sbjct: 25  RCQKVDHEMCNDLPYNLTSFPNLVDEESWKD 55


>AC006736-2|AAF60493.1|  529|Caenorhabditis elegans Abnormal cell
           migration protein1, isoform b protein.
          Length = 529

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +2

Query: 431 RCQDITIPMCRGIGYNLTSFPNALDHDTQEE 523
           RCQ +   MC  + YNLTSFPN +D ++ ++
Sbjct: 25  RCQKVDHEMCNDLPYNLTSFPNLVDEESWKD 55


>AC006736-1|AAF60492.1|  525|Caenorhabditis elegans Abnormal cell
           migration protein1, isoform a protein.
          Length = 525

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +2

Query: 431 RCQDITIPMCRGIGYNLTSFPNALDHDTQEE 523
           RCQ +   MC  + YNLTSFPN +D ++ ++
Sbjct: 25  RCQKVDHEMCNDLPYNLTSFPNLVDEESWKD 55


>AC084197-27|AAG23467.2|  314|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.21 protein.
          Length = 314

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 428 PRCQDI--TIPMCRGIGYNLTSFPNALDHDTQEE 523
           P+C DI   + +C GI Y     PN L+H+T  E
Sbjct: 35  PKCVDIPSNLSICNGIEYTQMRLPNILEHETVSE 68


>U63557-1|AAC47301.1|  558|Caenorhabditis elegans transmembrane
           receptor LIN-17 protein.
          Length = 558

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 431 RCQDITIPMCRGIGYNLTSFPNALDHDTQ 517
           +C  I I +C+ + YN T FPN + H+ Q
Sbjct: 27  KCIPIDIELCKDLPYNYTYFPNTILHNDQ 55


>AC024201-2|AAK82924.1|  556|Caenorhabditis elegans Abnormal cell
           lineage protein 17,isoform b protein.
          Length = 556

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 431 RCQDITIPMCRGIGYNLTSFPNALDHDTQ 517
           +C  I I +C+ + YN T FPN + H+ Q
Sbjct: 27  KCIPIDIELCKDLPYNYTYFPNTILHNDQ 55


>AC024201-1|AAF36028.1|  558|Caenorhabditis elegans Abnormal cell
           lineage protein 17,isoform a protein.
          Length = 558

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 431 RCQDITIPMCRGIGYNLTSFPNALDHDTQ 517
           +C  I I +C+ + YN T FPN + H+ Q
Sbjct: 27  KCIPIDIELCKDLPYNYTYFPNTILHNDQ 55


>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
            mutant phenotypeprotein 1 protein.
          Length = 4177

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 226  RSVTRGTTALGRRRIFLHLTDEIFSIRPSRLDYVR 122
            R + RGTT  G   +     D IF IRPS + + R
Sbjct: 2684 RMLVRGTTTHGDGGVHTSFFDHIFDIRPSNVAFSR 2718


>U55363-2|AAA97961.3|  357|Caenorhabditis elegans Serpentine
           receptor, class h protein28 protein.
          Length = 357

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 156 FRYGRHVSITCDIRYFVYYYFNEDLLKVIYLSLIS 52
           F YG ++S  C +  F   Y N+D  K  +  L++
Sbjct: 152 FVYGTYISSVCSLSNFALLYENQDNAKFFWYKLLA 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,869,160
Number of Sequences: 27780
Number of extensions: 194111
Number of successful extensions: 515
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)