Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15b06
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58085-1|AAC47122.1|  780|Caenorhabditis elegans CUL-3 protein.       187   5e-48
AC024744-3|AAK72067.1|  777|Caenorhabditis elegans Cullin protei...   187   5e-48
Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF016417-2|AAB65279.2|  533|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z68014-1|CAA92023.1|  335|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z36238-10|CAL63999.1|  287|Caenorhabditis elegans Hypothetical p...    28   5.0  
Z36238-9|CAL63998.1|  335|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AF443191-1|AAL60201.1|  285|Caenorhabditis elegans X-box binding...    28   5.0  
AF443190-1|AAL60200.1|  287|Caenorhabditis elegans X-box binding...    28   5.0  
Z67990-5|CAA91936.2|  638|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U88174-6|AAB42272.1|  680|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AC024202-4|AAF36036.1|  406|Caenorhabditis elegans Hypothetical ...    28   6.6  
AC006816-3|AAK85510.3|  508|Caenorhabditis elegans Hypothetical ...    28   6.6  
AB012617-1|BAA33488.1|  638|Caenorhabditis elegans FLR-1 protein.      28   6.6  
Z74472-6|CAA98947.1| 1025|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z67884-2|CAA91808.1|  429|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AL021171-5|CAE17871.1|  688|Caenorhabditis elegans Hypothetical ...    27   8.7  

>U58085-1|AAC47122.1|  780|Caenorhabditis elegans CUL-3 protein.
          Length = 780

 Score =  187 bits (456), Expect = 5e-48
 Identities = 90/148 (60%), Positives = 114/148 (77%), Gaps = 2/148 (1%)
 Frame = +3

Query: 207 TMDEKYVERIWSLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYTGLKEVVTQ 386
           T+DE+YV + W LLK AIQEIQ+KNNSGLSFEELYRNAYTMVLHKHGERLY GLK+V+  
Sbjct: 21  TIDEQYVTQTWELLKRAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGERLYNGLKDVIQD 80

Query: 387 HLETKVREDVLHSLHNG-FLQTLNNAWTDHQTSMVMIRDILMYMDRVFV-QQNEVDNVYN 560
           H+   VR  ++ S+++G FL+T+  +W DH  +MVMIRDILMYMDR++V Q N V  VYN
Sbjct: 81  HM-ASVRIRIIESMNSGSFLETVAESWADHTVAMVMIRDILMYMDRIYVAQNNHVLPVYN 139

Query: 561 LGLIIFRDQVVRYGCIRDHLRQTLLELV 644
           LGL  +R +++R   I D +R  LLEL+
Sbjct: 140 LGLDAYRTEILRQNGIGDRIRDALLELI 167


>AC024744-3|AAK72067.1|  777|Caenorhabditis elegans Cullin protein 3
           protein.
          Length = 777

 Score =  187 bits (456), Expect = 5e-48
 Identities = 90/148 (60%), Positives = 114/148 (77%), Gaps = 2/148 (1%)
 Frame = +3

Query: 207 TMDEKYVERIWSLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYTGLKEVVTQ 386
           T+DE+YV + W LLK AIQEIQ+KNNSGLSFEELYRNAYTMVLHKHGERLY GLK+V+  
Sbjct: 21  TIDEQYVTQTWELLKRAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGERLYNGLKDVIQD 80

Query: 387 HLETKVREDVLHSLHNG-FLQTLNNAWTDHQTSMVMIRDILMYMDRVFV-QQNEVDNVYN 560
           H+   VR  ++ S+++G FL+T+  +W DH  +MVMIRDILMYMDR++V Q N V  VYN
Sbjct: 81  HM-ASVRIRIIESMNSGSFLETVAESWADHTVAMVMIRDILMYMDRIYVAQNNHVLPVYN 139

Query: 561 LGLIIFRDQVVRYGCIRDHLRQTLLELV 644
           LGL  +R +++R   I D +R  LLEL+
Sbjct: 140 LGLDAYRTEILRQNGIGDRIRDALLELI 167


>Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical
           protein B0365.7 protein.
          Length = 2769

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 31/132 (23%), Positives = 68/132 (51%), Gaps = 3/132 (2%)
 Frame = +3

Query: 261 QEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYTGLKEVVTQHLETKVREDVLHSLHNGF 440
           ++I+K++ S ++  EL   A +++L +   +  TG++EV TQ      R DVL  L N  
Sbjct: 407 RDIKKRSLSKIT--ELEEKAKSLILIRLIGK-NTGIREVFTQCSAKLFRNDVLVQLRN-- 461

Query: 441 LQTLNNAWTDHQTSMVMI-RDILMYMDRVFVQQNEVDNVYNLGLIIFR-DQVVRYGCIR- 611
           ++ + N     +  + ++ +   +YM+   +   ++   Y +  + F+ +Q+V +   R 
Sbjct: 462 IEEVQNELPSIKDRIKIVGQTYKVYMEYFTMPDYDIRQFYEISRLGFKLEQLVNFVWDRI 521

Query: 612 DHLRQTLLELVA 647
           +H RQ + + V+
Sbjct: 522 NHERQWITKQVS 533


>Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical
           protein B0365.7 protein.
          Length = 2769

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 31/132 (23%), Positives = 68/132 (51%), Gaps = 3/132 (2%)
 Frame = +3

Query: 261 QEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYTGLKEVVTQHLETKVREDVLHSLHNGF 440
           ++I+K++ S ++  EL   A +++L +   +  TG++EV TQ      R DVL  L N  
Sbjct: 407 RDIKKRSLSKIT--ELEEKAKSLILIRLIGK-NTGIREVFTQCSAKLFRNDVLVQLRN-- 461

Query: 441 LQTLNNAWTDHQTSMVMI-RDILMYMDRVFVQQNEVDNVYNLGLIIFR-DQVVRYGCIR- 611
           ++ + N     +  + ++ +   +YM+   +   ++   Y +  + F+ +Q+V +   R 
Sbjct: 462 IEEVQNELPSIKDRIKIVGQTYKVYMEYFTMPDYDIRQFYEISRLGFKLEQLVNFVWDRI 521

Query: 612 DHLRQTLLELVA 647
           +H RQ + + V+
Sbjct: 522 NHERQWITKQVS 533


>AF016417-2|AAB65279.2|  533|Caenorhabditis elegans Hypothetical
           protein F17A9.2 protein.
          Length = 533

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +3

Query: 303 ELYRNAYTMVLHKHGERLYTGLKEVVTQHLETKV 404
           E +++A+T++ +K G+ L T  +   TQHL+ ++
Sbjct: 380 EKFKSAFTLMANKQGKALVTFERNFRTQHLQVQM 413


>Z68014-1|CAA92023.1|  335|Caenorhabditis elegans Hypothetical
           protein W04G3.1 protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 159 WNFSEPYYQMYPDTWMTMDEKYVERIWSLLKNAIQEIQKKNNSGLS 296
           WN  +P YQ     W +  E +  R+   LKN  QE+ ++N +G S
Sbjct: 249 WNSPKPIYQGPDCEWPSEKEVFARRV---LKN--QEMNERNKNGTS 289


>Z36238-10|CAL63999.1|  287|Caenorhabditis elegans Hypothetical
           protein R74.3b protein.
          Length = 287

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -2

Query: 590 NLISEDNEPKI-VDIVNFILLNKNSVHIHQNISYHDHAGLMVSPCIV 453
           NL+++ NE  + ++  N  L+N N   I+QN+ Y +     V+P +V
Sbjct: 116 NLMNQQNESVMYMEENNENLMNSNDACIYQNVVYEEEVVGEVAPVVV 162


>Z36238-9|CAL63998.1|  335|Caenorhabditis elegans Hypothetical
           protein R74.3a protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -2

Query: 590 NLISEDNEPKI-VDIVNFILLNKNSVHIHQNISYHDHAGLMVSPCIV 453
           NL+++ NE  + ++  N  L+N N   I+QN+ Y +     V+P +V
Sbjct: 116 NLMNQQNESVMYMEENNENLMNSNDACIYQNVVYEEEVVGEVAPVVV 162


>AF443191-1|AAL60201.1|  285|Caenorhabditis elegans X-box binding
           protein processedisoform protein.
          Length = 285

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -2

Query: 590 NLISEDNEPKI-VDIVNFILLNKNSVHIHQNISYHDHAGLMVSPCIV 453
           NL+++ NE  + ++  N  L+N N   I+QN+ Y +     V+P +V
Sbjct: 116 NLMNQQNESVMYMEENNENLMNSNDACIYQNVVYEEEVVGEVAPVVV 162


>AF443190-1|AAL60200.1|  287|Caenorhabditis elegans X-box binding
           protein unprocessedisoform protein.
          Length = 287

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -2

Query: 590 NLISEDNEPKI-VDIVNFILLNKNSVHIHQNISYHDHAGLMVSPCIV 453
           NL+++ NE  + ++  N  L+N N   I+QN+ Y +     V+P +V
Sbjct: 116 NLMNQQNESVMYMEENNENLMNSNDACIYQNVVYEEEVVGEVAPVVV 162


>Z67990-5|CAA91936.2|  638|Caenorhabditis elegans Hypothetical
           protein F02D10.5 protein.
          Length = 638

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -3

Query: 427 NECNTSSRTLVSRC*VTTSLRPVYSLSPCLCSTIVYALR*SSSNDS 290
           N  +T      + C +   LR V +L  C CS + Y+ R S SND+
Sbjct: 295 NRNDTDVPYTATHCEIDCKLRKVRNL--CGCSPLAYSARESGSNDT 338


>U88174-6|AAB42272.1|  680|Caenorhabditis elegans Hypothetical
           protein M01A10.1 protein.
          Length = 680

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -2

Query: 620 KMISNASITNNLISEDNEPKIVDIVNFILLNKNSVHI 510
           K ISN + T      D++PK+++    ++ NKN V++
Sbjct: 354 KKISNETETKIQFMPDDDPKLMERTLVVIGNKNKVYV 390


>AC024202-4|AAF36036.1|  406|Caenorhabditis elegans Hypothetical
           protein Y71H2B.7 protein.
          Length = 406

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +3

Query: 129 KIKMIRKFKVWNFSEPY-YQMYPDTWMTMDEKYVERIWSL--LKNAIQ 263
           K  ++R+ K     +P  YQMY D+W  +D + +   + L  LKN ++
Sbjct: 45  KTTIVRQLKCLCIQKPQSYQMYDDSWNLIDREKIFDNYELENLKNVVR 92


>AC006816-3|AAK85510.3|  508|Caenorhabditis elegans Hypothetical
           protein Y71D11A.5 protein.
          Length = 508

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 315 YGKALQMIVQSCFSFVFLVWHSLTSSIYAPHTSHP*SSKCL 193
           Y KA+ + + SC +FVF     L    Y      P S+KCL
Sbjct: 330 YVKAIDVWMLSCMTFVFCSLLELAWVGYLSREEEPTSAKCL 370


>AB012617-1|BAA33488.1|  638|Caenorhabditis elegans FLR-1 protein.
          Length = 638

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -3

Query: 427 NECNTSSRTLVSRC*VTTSLRPVYSLSPCLCSTIVYALR*SSSNDS 290
           N  +T      + C +   LR V +L  C CS + Y+ R S SND+
Sbjct: 295 NRNDTDVPYTATHCEIDCKLRKVRNL--CGCSPLAYSARESGSNDT 338


>Z74472-6|CAA98947.1| 1025|Caenorhabditis elegans Hypothetical
           protein F23H12.6 protein.
          Length = 1025

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +3

Query: 258 IQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYTGLKEVVTQHLETKVREDVL 419
           + ++ K  NSG S      +    VL KH   L   ++E + + +E K + D+L
Sbjct: 770 VNKLMKNMNSGRSGSANLMDHVFSVLEKHASSLEDEVQERMKELVEEKKKSDIL 823


>Z67884-2|CAA91808.1|  429|Caenorhabditis elegans Hypothetical
           protein T14G8.4 protein.
          Length = 429

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 539 ILLNKNSVHIHQNISYHDHAGLMVSPC 459
           + +NK  +H+H N+ YH  A ++   C
Sbjct: 66  VRMNKVPLHLHNNVIYHQFALVLAQWC 92


>AL021171-5|CAE17871.1|  688|Caenorhabditis elegans Hypothetical
           protein H04D03.4 protein.
          Length = 688

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +3

Query: 195 DTWMTMDEKYVERIWSLLKNAIQEIQKKNNSGLSFEELYRNAYTMVL-HKH 344
           D W  + +++ E +W L++  I     K    L++E++ R A  +++ HKH
Sbjct: 425 DNWPGLMKRHSEEMWQLIERLIDSKFCK----LNYEKIVRKAVRLLIRHKH 471


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,130,679
Number of Sequences: 27780
Number of extensions: 339797
Number of successful extensions: 1005
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)