Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15b02
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    28   1.2  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    27   2.1  
SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...    26   6.3  
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    26   6.3  

>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 313  FPCHVKAHIGTSIPKIPLKCISTTFLILGATP 218
            FP  +  H    IP IPL+C+    ++L A P
Sbjct: 1825 FPGFLATHCYQLIPYIPLECVQLRNMVLSAFP 1856


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1077

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 302  R*STYRYQHPKDSSKVHQHHVFNSRCDALNRSS 204
            R + Y +  P DSS V   H FNS    L R+S
Sbjct: 946  RYAVYPHSKPLDSSTVRAAHKFNSNFRLLTRAS 978


>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 285 PICALTWQGKKGVNS 329
           P+CA+ W+GK+ V +
Sbjct: 71  PVCAMIWEGKQAVKT 85


>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +1

Query: 76  FKHQKWARKLQNPTQKVKVEKI----KMMKGKGLLIQSSRFSVEKTLELR 213
           F+ +   +KLQ P +K K EKI    K+  GK L  + S   + +T + R
Sbjct: 169 FEPENTRKKLQKPIEKPKKEKIEATPKIDGGKRLKNEKSSAEISQTSKQR 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,003,711
Number of Sequences: 5004
Number of extensions: 61221
Number of successful extensions: 161
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)