Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15b02
         (727 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY102686-1|AAM27515.1|  572|Drosophila melanogaster LD24274p pro...    51   1e-06
AF509505-1|AAN86815.1|  572|Drosophila melanogaster INDY transpo...    51   1e-06
AE014296-3064|AAN11670.1|  572|Drosophila melanogaster CG3979-PC...    51   1e-06
AE014296-3063|AAF49226.1|  572|Drosophila melanogaster CG3979-PA...    51   1e-06
AE014296-3062|AAF49227.2|  590|Drosophila melanogaster CG3979-PB...    51   1e-06
AJ277789-1|CAB93525.1| 1738|Drosophila melanogaster mismatch dep...    29   8.5  
AF132141-1|AAD33588.1| 1095|Drosophila melanogaster G/T mismatch...    29   8.5  
AE014135-90|AAF59338.1| 1738|Drosophila melanogaster CG1981-PA p...    29   8.5  

>AY102686-1|AAM27515.1|  572|Drosophila melanogaster LD24274p
           protein.
          Length = 572

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 3/178 (1%)
 Frame = +3

Query: 192 GKDPRTPVKGVAPRIKNVVLMHFRGIFGMLVPI-CALTWQGKKGVNSITVQCXXXXXXXX 368
           G+ P+ PVK       N    H++G+   LVP+ C       +G      +C        
Sbjct: 6   GEQPQPPVK-----CSNFFANHWKGLVVFLVPLLCLPVMLLNEGAE---FRCMYLLLVMA 57

Query: 369 XXXQPVAIP--ATGLIPIFILPMAGVMPTIETCVCYMNENIVXXXXXXXXXXXXNNSGVD 542
                 A+P   T +IPI   P+ G+M + +TC  Y  + +V                + 
Sbjct: 58  IFWVTEALPLYVTSMIPIVAFPIMGIMSSDQTCRLYFKDTLVMFMGGIMVALAVEYCNLH 117

Query: 543 RRIALKLLCSGDACQFSGKRLVFKCSTAAFFLSMFSSRLITSSMITQMVTPALMDLQS 716
           +R+AL+++        S +RL F       FLSM+ S    ++M+  ++   L +LQ+
Sbjct: 118 KRLALRVI---QIVGCSPRRLHFGLIMVTMFLSMWISNAACTAMMCPIIQAVLEELQA 172


>AF509505-1|AAN86815.1|  572|Drosophila melanogaster INDY
           transporter protein protein.
          Length = 572

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 3/178 (1%)
 Frame = +3

Query: 192 GKDPRTPVKGVAPRIKNVVLMHFRGIFGMLVPI-CALTWQGKKGVNSITVQCXXXXXXXX 368
           G+ P+ PVK       N    H++G+   LVP+ C       +G      +C        
Sbjct: 6   GEQPQPPVK-----CSNFFANHWKGLVVFLVPLLCLPVMLLNEGAE---FRCMYLLLVMA 57

Query: 369 XXXQPVAIP--ATGLIPIFILPMAGVMPTIETCVCYMNENIVXXXXXXXXXXXXNNSGVD 542
                 A+P   T +IPI   P+ G+M + +TC  Y  + +V                + 
Sbjct: 58  IFWVTEALPLYVTSMIPIVAFPIMGIMSSDQTCRLYFKDTLVMFMGGIMVALAVEYCNLH 117

Query: 543 RRIALKLLCSGDACQFSGKRLVFKCSTAAFFLSMFSSRLITSSMITQMVTPALMDLQS 716
           +R+AL+++        S +RL F       FLSM+ S    ++M+  ++   L +LQ+
Sbjct: 118 KRLALRVI---QIVGCSPRRLHFGLIMVTMFLSMWISNAACTAMMCPIIQAVLEELQA 172


>AE014296-3064|AAN11670.1|  572|Drosophila melanogaster CG3979-PC,
           isoform C protein.
          Length = 572

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 3/178 (1%)
 Frame = +3

Query: 192 GKDPRTPVKGVAPRIKNVVLMHFRGIFGMLVPI-CALTWQGKKGVNSITVQCXXXXXXXX 368
           G+ P+ PVK       N    H++G+   LVP+ C       +G      +C        
Sbjct: 6   GEQPQPPVK-----CSNFFANHWKGLVVFLVPLLCLPVMLLNEGAE---FRCMYLLLVMA 57

Query: 369 XXXQPVAIP--ATGLIPIFILPMAGVMPTIETCVCYMNENIVXXXXXXXXXXXXNNSGVD 542
                 A+P   T +IPI   P+ G+M + +TC  Y  + +V                + 
Sbjct: 58  IFWVTEALPLYVTSMIPIVAFPIMGIMSSDQTCRLYFKDTLVMFMGGIMVALAVEYCNLH 117

Query: 543 RRIALKLLCSGDACQFSGKRLVFKCSTAAFFLSMFSSRLITSSMITQMVTPALMDLQS 716
           +R+AL+++        S +RL F       FLSM+ S    ++M+  ++   L +LQ+
Sbjct: 118 KRLALRVI---QIVGCSPRRLHFGLIMVTMFLSMWISNAACTAMMCPIIQAVLEELQA 172


>AE014296-3063|AAF49226.1|  572|Drosophila melanogaster CG3979-PA,
           isoform A protein.
          Length = 572

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 3/178 (1%)
 Frame = +3

Query: 192 GKDPRTPVKGVAPRIKNVVLMHFRGIFGMLVPI-CALTWQGKKGVNSITVQCXXXXXXXX 368
           G+ P+ PVK       N    H++G+   LVP+ C       +G      +C        
Sbjct: 6   GEQPQPPVK-----CSNFFANHWKGLVVFLVPLLCLPVMLLNEGAE---FRCMYLLLVMA 57

Query: 369 XXXQPVAIP--ATGLIPIFILPMAGVMPTIETCVCYMNENIVXXXXXXXXXXXXNNSGVD 542
                 A+P   T +IPI   P+ G+M + +TC  Y  + +V                + 
Sbjct: 58  IFWVTEALPLYVTSMIPIVAFPIMGIMSSDQTCRLYFKDTLVMFMGGIMVALAVEYCNLH 117

Query: 543 RRIALKLLCSGDACQFSGKRLVFKCSTAAFFLSMFSSRLITSSMITQMVTPALMDLQS 716
           +R+AL+++        S +RL F       FLSM+ S    ++M+  ++   L +LQ+
Sbjct: 118 KRLALRVI---QIVGCSPRRLHFGLIMVTMFLSMWISNAACTAMMCPIIQAVLEELQA 172


>AE014296-3062|AAF49227.2|  590|Drosophila melanogaster CG3979-PB,
           isoform B protein.
          Length = 590

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 3/178 (1%)
 Frame = +3

Query: 192 GKDPRTPVKGVAPRIKNVVLMHFRGIFGMLVPI-CALTWQGKKGVNSITVQCXXXXXXXX 368
           G+ P+ PVK       N    H++G+   LVP+ C       +G      +C        
Sbjct: 24  GEQPQPPVK-----CSNFFANHWKGLVVFLVPLLCLPVMLLNEGAE---FRCMYLLLVMA 75

Query: 369 XXXQPVAIP--ATGLIPIFILPMAGVMPTIETCVCYMNENIVXXXXXXXXXXXXNNSGVD 542
                 A+P   T +IPI   P+ G+M + +TC  Y  + +V                + 
Sbjct: 76  IFWVTEALPLYVTSMIPIVAFPIMGIMSSDQTCRLYFKDTLVMFMGGIMVALAVEYCNLH 135

Query: 543 RRIALKLLCSGDACQFSGKRLVFKCSTAAFFLSMFSSRLITSSMITQMVTPALMDLQS 716
           +R+AL+++        S +RL F       FLSM+ S    ++M+  ++   L +LQ+
Sbjct: 136 KRLALRVI---QIVGCSPRRLHFGLIMVTMFLSMWISNAACTAMMCPIIQAVLEELQA 190


>AJ277789-1|CAB93525.1| 1738|Drosophila melanogaster mismatch depedent
            uracil/thymineDNA glycosylase protein.
          Length = 1738

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 386  HWLQQKEPQHPKPHALNCDRIHSFFSLP 303
            H +    P HP PH++  D+ H    +P
Sbjct: 1605 HTISHPHPPHPHPHSMYVDQAHHMAHIP 1632


>AF132141-1|AAD33588.1| 1095|Drosophila melanogaster G/T
            mismatch-specific thymineDNA glycosylase protein.
          Length = 1095

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 386  HWLQQKEPQHPKPHALNCDRIHSFFSLP 303
            H +    P HP PH++  D+ H    +P
Sbjct: 962  HTISHPHPPHPHPHSMYVDQAHHMAHIP 989


>AE014135-90|AAF59338.1| 1738|Drosophila melanogaster CG1981-PA
            protein.
          Length = 1738

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 386  HWLQQKEPQHPKPHALNCDRIHSFFSLP 303
            H +    P HP PH++  D+ H    +P
Sbjct: 1605 HTISHPHPPHPHPHSMYVDQAHHMAHIP 1632


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,406,712
Number of Sequences: 53049
Number of extensions: 688436
Number of successful extensions: 1945
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1945
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3252477558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)