Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte15b02
(727 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z14092-1|CAA78468.2| 551|Caenorhabditis elegans Hypothetical pr... 42 3e-04
AY090486-1|AAM11895.1| 551|Caenorhabditis elegans high-affinity... 42 3e-04
Z30974-2|CAD82916.1| 478|Caenorhabditis elegans Hypothetical pr... 34 0.12
Z30974-1|CAA83225.3| 566|Caenorhabditis elegans Hypothetical pr... 34 0.12
AY090485-1|AAM11894.1| 566|Caenorhabditis elegans high-affinity... 34 0.12
Z69884-8|CAA93752.2| 582|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z68160-3|CAA92291.1| 269|Caenorhabditis elegans Hypothetical pr... 28 5.9
AY090484-1|AAM11893.1| 582|Caenorhabditis elegans low-affinity ... 28 5.9
Z96102-1|CAE17867.1| 220|Caenorhabditis elegans Hypothetical pr... 28 7.8
>Z14092-1|CAA78468.2| 551|Caenorhabditis elegans Hypothetical
protein R107.1 protein.
Length = 551
Score = 42.3 bits (95), Expect = 3e-04
Identities = 31/110 (28%), Positives = 49/110 (44%)
Frame = +3
Query: 390 IPATGLIPIFILPMAGVMPTIETCVCYMNENIVXXXXXXXXXXXXNNSGVDRRIALKLLC 569
I T L P+ + P+ ++P+ + Y ++IV +G+ RRIALKLL
Sbjct: 52 IGVTSLFPLALYPILQIVPSKQISPVYFKDSIVLFMCTLIMAMAVEATGLHRRIALKLLT 111
Query: 570 SGDACQFSGKRLVFKCSTAAFFLSMFSSRLITSSMITQMVTPALMDLQSA 719
A Q L F C T+ F+S F S ++++ LM + A
Sbjct: 112 KVGAKQ-PVMLLGFMCITS--FISFFVSDTACTALMCPTAVALLMSMSDA 158
>AY090486-1|AAM11895.1| 551|Caenorhabditis elegans high-affinity
dicarboxylate transporterINDY3 protein.
Length = 551
Score = 42.3 bits (95), Expect = 3e-04
Identities = 31/110 (28%), Positives = 49/110 (44%)
Frame = +3
Query: 390 IPATGLIPIFILPMAGVMPTIETCVCYMNENIVXXXXXXXXXXXXNNSGVDRRIALKLLC 569
I T L P+ + P+ ++P+ + Y ++IV +G+ RRIALKLL
Sbjct: 52 IGVTSLFPLALYPILQIVPSKQISPVYFKDSIVLFMCTLSMAMAVEATGLHRRIALKLLT 111
Query: 570 SGDACQFSGKRLVFKCSTAAFFLSMFSSRLITSSMITQMVTPALMDLQSA 719
A Q L F C T+ F+S F S ++++ LM + A
Sbjct: 112 KVGAKQ-PVMLLGFMCITS--FISFFVSDTACTALMCPTAVALLMSMSDA 158
>Z30974-2|CAD82916.1| 478|Caenorhabditis elegans Hypothetical
protein K08E5.2b protein.
Length = 478
Score = 33.9 bits (74), Expect = 0.12
Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 1/114 (0%)
Frame = +3
Query: 381 PVAIPATGLIPIFILPMAGVMPTIETCVCYMNENIVXXXXXXXXXXXXNNSGVDRRIALK 560
P+A+ T ++P+ + P+ GV+ T YMN+ + R+AL
Sbjct: 6 PLAV--TAMLPVVLFPLVGVLDANTTAKEYMNDTNFLFIGGLIMAAAVEKCDLHERVALS 63
Query: 561 LL-CSGDACQFSGKRLVFKCSTAAFFLSMFSSRLITSSMITQMVTPALMDLQSA 719
+L C G K ++ T LS F S T++M+ + + L S+
Sbjct: 64 VLRCVGS----EPKWIMLGFMTVTALLSSFISNTATTAMMVPIGQSVVQQLISS 113
>Z30974-1|CAA83225.3| 566|Caenorhabditis elegans Hypothetical
protein K08E5.2a protein.
Length = 566
Score = 33.9 bits (74), Expect = 0.12
Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 1/114 (0%)
Frame = +3
Query: 381 PVAIPATGLIPIFILPMAGVMPTIETCVCYMNENIVXXXXXXXXXXXXNNSGVDRRIALK 560
P+A+ T ++P+ + P+ GV+ T YMN+ + R+AL
Sbjct: 94 PLAV--TAMLPVVLFPLVGVLDANTTAKEYMNDTNFLFIGGLIMAAAVEKCDLHERVALS 151
Query: 561 LL-CSGDACQFSGKRLVFKCSTAAFFLSMFSSRLITSSMITQMVTPALMDLQSA 719
+L C G K ++ T LS F S T++M+ + + L S+
Sbjct: 152 VLRCVGS----EPKWIMLGFMTVTALLSSFISNTATTAMMVPIGQSVVQQLISS 201
>AY090485-1|AAM11894.1| 566|Caenorhabditis elegans high-affinity
plasma membrane transporterINDY2 protein.
Length = 566
Score = 33.9 bits (74), Expect = 0.12
Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 1/114 (0%)
Frame = +3
Query: 381 PVAIPATGLIPIFILPMAGVMPTIETCVCYMNENIVXXXXXXXXXXXXNNSGVDRRIALK 560
P+A+ T ++P+ + P+ GV+ T YMN+ + R+AL
Sbjct: 94 PLAV--TAMLPVVLFPLVGVLDANTTAKEYMNDTNFLFIGGLIMAAAVEKCDLHERVALS 151
Query: 561 LL-CSGDACQFSGKRLVFKCSTAAFFLSMFSSRLITSSMITQMVTPALMDLQSA 719
+L C G K ++ T LS F S T++M+ + + L S+
Sbjct: 152 VLRCVGS----EPKWIMLGFMTVTALLSSFISNTATTAMMVPIGQSVVQQLISS 201
>Z69884-8|CAA93752.2| 582|Caenorhabditis elegans Hypothetical
protein F31F6.6 protein.
Length = 582
Score = 28.3 bits (60), Expect = 5.9
Identities = 24/112 (21%), Positives = 48/112 (42%)
Frame = +3
Query: 381 PVAIPATGLIPIFILPMAGVMPTIETCVCYMNENIVXXXXXXXXXXXXNNSGVDRRIALK 560
P+AI T IP+ + P+ G+M + E Y+ + + R+AL
Sbjct: 61 PLAI--TAFIPMILFPLFGIMRSEEVARAYLPDTCFLFMGGLMVALAVEKCELHARVALF 118
Query: 561 LLCSGDACQFSGKRLVFKCSTAAFFLSMFSSRLITSSMITQMVTPALMDLQS 716
+L + + R++ FLSM+ S T++++ ++ + +L S
Sbjct: 119 VLKTVGS---EPARVMAGFMGVTGFLSMWISNTATTALMVPILQSVITELVS 167
>Z68160-3|CAA92291.1| 269|Caenorhabditis elegans Hypothetical
protein D1046.3 protein.
Length = 269
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +3
Query: 93 GKETPKSDAKGKSGKNKDDEGKGIVDTIKSFFRGKDPRTPVKGVAPRI 236
G TP AK + K+ GI+ T+K + R GV PR+
Sbjct: 197 GLTTPLDVAKTRIMLTKNGPAPGILSTLKEVYTSNGVRGLYSGVVPRV 244
>AY090484-1|AAM11893.1| 582|Caenorhabditis elegans low-affinity
dicarboxylate transporterINDY1 protein.
Length = 582
Score = 28.3 bits (60), Expect = 5.9
Identities = 24/112 (21%), Positives = 48/112 (42%)
Frame = +3
Query: 381 PVAIPATGLIPIFILPMAGVMPTIETCVCYMNENIVXXXXXXXXXXXXNNSGVDRRIALK 560
P+AI T IP+ + P+ G+M + E Y+ + + R+AL
Sbjct: 61 PLAI--TAFIPMILFPLFGIMRSEEVARAYLPDTCFLFMGGLMVALAVEKCELHARVALF 118
Query: 561 LLCSGDACQFSGKRLVFKCSTAAFFLSMFSSRLITSSMITQMVTPALMDLQS 716
+L + + R++ FLSM+ S T++++ ++ + +L S
Sbjct: 119 VLKTVGS---EPARVMAGFMGVTGFLSMWISNTATTALMVPILQSVITELVS 167
>Z96102-1|CAE17867.1| 220|Caenorhabditis elegans Hypothetical
protein H39E23.2 protein.
Length = 220
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 553 RLSFCVLETLVSFPVKDWYLNVAQRLSSYPCLVAD 657
+LS CV E L + P + W +AQ L + CL+ D
Sbjct: 134 KLSSCVKEHLDATPTRKWTCEIAQDLGN--CLLPD 166
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,629,821
Number of Sequences: 27780
Number of extensions: 346418
Number of successful extensions: 881
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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