Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15b02
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.96 
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   5.1  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   5.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   5.1  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 440 NTSHW*NENWNQSSCGYGHWLQQKEPQHPK 351
           N SH+ N + + +   YG W+   +P  PK
Sbjct: 573 NISHFINHSCDPNLAVYGVWINCLDPNLPK 602


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 689 YHLRNHGGS 663
           YHLRNH GS
Sbjct: 6   YHLRNHFGS 14


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 511 CFYCSTIRGWIVA*RLSFCVLETLV 585
           CF C  +  WI+   +S  V + LV
Sbjct: 415 CFVCFNLMYWIIYLHISDVVADDLV 439


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 511 CFYCSTIRGWIVA*RLSFCVLETLV 585
           CF C  +  WI+   +S  V + LV
Sbjct: 415 CFVCFNLMYWIIYLHISDVVADDLV 439


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,312
Number of Sequences: 438
Number of extensions: 4136
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)