Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15a22
         (254 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0159 - 23194738-23194914,23195035-23195190,23195581-23196570     30   0.30 
04_03_1041 - 21938347-21938529,21938618-21938773,21939291-219394...    27   2.1  
10_06_0139 - 11139004-11139031,11139300-11141017,11141408-111414...    26   4.8  

>04_04_0159 - 23194738-23194914,23195035-23195190,23195581-23196570
          Length = 440

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -3

Query: 186 NMYLLKKVKTNTPN*FKILLHSCCFYSLPIR 94
           N Y+LK V  N PN   + LH C F   P R
Sbjct: 359 NCYVLKSVLRNAPNLEHLRLHRCKFLGTPKR 389


>04_03_1041 -
           21938347-21938529,21938618-21938773,21939291-21939408,
           21939536-21940203,21941773-21941802
          Length = 384

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 186 NMYLLKKVKTNTPN*FKILLHSCCFYSLPIRWNRLLQ 76
           N  LL+ +  N+PN  K+ +H C F    + W +  Q
Sbjct: 301 NNELLRHLLQNSPNLEKLTVHCCKFSKGSLEWRKSSQ 337


>10_06_0139 -
           11139004-11139031,11139300-11141017,11141408-11141477,
           11142520-11143361
          Length = 885

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 141 FKILLHSCCFYSLPIRW 91
           F+ LLHSC FY +P +W
Sbjct: 640 FEWLLHSCIFYRVP-KW 655


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,427,924
Number of Sequences: 37544
Number of extensions: 81561
Number of successful extensions: 106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 14,793,348
effective HSP length: 63
effective length of database: 12,428,076
effective search space used: 260989596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)