Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15a18
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal pro...   246   1e-65
AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal...   205   2e-53
AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal pro...   159   1e-39
Z81576-2|CAB04644.1|  522|Caenorhabditis elegans Hypothetical pr...    31   0.53 
AF067949-5|AAC19234.1|  109|Caenorhabditis elegans Synaptobrevin...    29   2.1  
AF003282-1|AAB61235.1|  109|Caenorhabditis elegans SNB-1 protein.      29   2.1  
AF003281-1|AAB61234.1|  109|Caenorhabditis elegans SNB-1 protein.      29   2.1  
AF099915-5|AAC68770.1|  118|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z70212-2|CAA94163.1|  430|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian el...    27   8.7  

>AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform a protein.
          Length = 216

 Score =  246 bits (601), Expect = 1e-65
 Identities = 117/197 (59%), Positives = 142/197 (72%)
 Frame = +1

Query: 58  SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 237
           SKVSR++L E +  VL+ S +K R F ET+ELQIGLKNYDPQKDKRFSG+++LK+IPRP 
Sbjct: 2   SKVSRESLNEAIAEVLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRPN 61

Query: 238 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 417
           M+VCV GDQ H DEA   ++P M                           SESLIKQIPR
Sbjct: 62  MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 121

Query: 418 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQN 597
           +LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLSVAVGHV +T +EL  N
Sbjct: 122 ILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVSN 181

Query: 598 VHLSINFLVSLLKKHWQ 648
           + LSINFLVSLLKK+WQ
Sbjct: 182 ISLSINFLVSLLKKNWQ 198


>AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal
           protein L10A protein.
          Length = 186

 Score =  205 bits (500), Expect = 2e-53
 Identities = 96/161 (59%), Positives = 115/161 (71%)
 Frame = +1

Query: 166 KNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXX 345
           KNYDPQKDKRFSG+++LK+IPRP M+VCV GDQ H DEA   ++P M             
Sbjct: 8   KNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKK 67

Query: 346 XXXXXXXXXXXXXXSESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQ 525
                         SESLIKQIPR+LGPGLNKAGKFP +++H ES+  K DE++ T+KFQ
Sbjct: 68  LIKKLAKSYDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQ 127

Query: 526 MKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQ 648
           MKKVLCLSVAVGHV +T +EL  N+ LSINFLVSLLKK+WQ
Sbjct: 128 MKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQ 168


>AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform b protein.
          Length = 155

 Score =  159 bits (387), Expect = 1e-39
 Identities = 77/137 (56%), Positives = 92/137 (67%)
 Frame = +1

Query: 238 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 417
           M+VCV GDQ H DEA   ++P M                           SESLIKQIPR
Sbjct: 1   MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 60

Query: 418 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQN 597
           +LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLSVAVGHV +T +EL  N
Sbjct: 61  ILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVSN 120

Query: 598 VHLSINFLVSLLKKHWQ 648
           + LSINFLVSLLKK+WQ
Sbjct: 121 ISLSINFLVSLLKKNWQ 137


>Z81576-2|CAB04644.1|  522|Caenorhabditis elegans Hypothetical
           protein R10E8.3 protein.
          Length = 522

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = -1

Query: 612 DGKMHILSKLIRSHVHMANCYRKTQHLLHLELNGS--LDFINLLRHGLLVGEKTREFTSF 439
           D + + L K+    + + + +R    + HLEL GS  L+FI LL    L  +K R+ T F
Sbjct: 329 DFERYTLEKMQNLGIFLGS-FRNKISMAHLELKGSSELEFIQLL--DCLDAKKLRKLTIF 385

Query: 438 VQTGTQQTGN 409
              G    GN
Sbjct: 386 ATVGDVNNGN 395


>AF067949-5|AAC19234.1|  109|Caenorhabditis elegans Synaptobrevin
           related protein 1 protein.
          Length = 109

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/72 (26%), Positives = 33/72 (45%)
 Frame = +1

Query: 430 GLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLS 609
           G ++ G  P     Q++  Q +DEV G +K  ++KVL     +  +D   D L +     
Sbjct: 11  GGSQGGPRPSNKRLQQTQAQ-VDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQF 69

Query: 610 INFLVSLLKKHW 645
                +L +K+W
Sbjct: 70  EKSAATLKRKYW 81


>AF003282-1|AAB61235.1|  109|Caenorhabditis elegans SNB-1 protein.
          Length = 109

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/72 (26%), Positives = 33/72 (45%)
 Frame = +1

Query: 430 GLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLS 609
           G ++ G  P     Q++  Q +DEV G +K  ++KVL     +  +D   D L +     
Sbjct: 11  GGSQGGPRPSNKRLQQTQAQ-VDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQF 69

Query: 610 INFLVSLLKKHW 645
                +L +K+W
Sbjct: 70  EKSAATLKRKYW 81


>AF003281-1|AAB61234.1|  109|Caenorhabditis elegans SNB-1 protein.
          Length = 109

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/72 (26%), Positives = 33/72 (45%)
 Frame = +1

Query: 430 GLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLS 609
           G ++ G  P     Q++  Q +DEV G +K  ++KVL     +  +D   D L +     
Sbjct: 11  GGSQGGPRPSNKRLQQTQAQ-VDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQF 69

Query: 610 INFLVSLLKKHW 645
                +L +K+W
Sbjct: 70  EKSAATLKRKYW 81


>AF099915-5|AAC68770.1|  118|Caenorhabditis elegans Hypothetical
           protein E02H9.4 protein.
          Length = 118

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 115 KDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYI 225
           K +K N  E VEL   +KNY P+ + R    V+ KY+
Sbjct: 41  KGEKYNGNEKVELTTTVKNYKPKNNTRKWPAVEAKYL 77


>Z70212-2|CAA94163.1|  430|Caenorhabditis elegans Hypothetical
           protein R04D3.3 protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +1

Query: 28  IGGSLTNKMSSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKR 195
           +GGS    + +   +D+L E ++ + +S K K    LET+  Q G K  D    +R
Sbjct: 189 VGGSSMEDVLTSDEKDSLSEAISNLPKSPKSKTDRDLETL-AQSGSKTRDSHSRRR 243


>AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian
           elks/cast/erc/rab6 interactingprotein homolog protein 1
           protein.
          Length = 836

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 400 IKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIK 519
           I +IP   G GLN A ++  L    ++M +K+++   +IK
Sbjct: 142 ISRIPTGTGSGLNIAREYEQLKVEYDTMMEKLNQTMNSIK 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.134    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,439,469
Number of Sequences: 27780
Number of extensions: 328331
Number of successful extensions: 817
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)