Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15a12
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               25   0.88 
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   8.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.2  

>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 240 CKQLHTAVILLSNTTYSPSDLCICRAPCISAC 145
           C  L  +VIL+++   +P   C C+AP  + C
Sbjct: 7   CIYLFLSVILITSYFVTPVMPCNCKAPETALC 38


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = +3

Query: 237 YTAYCVCRSLPVIFYLLLGVYYFVCQTVWCILFCS*R 347
           +  YC     P I+ L    + F  +++ C  FC  R
Sbjct: 49  WLGYCNSAINPCIYALFSKDFRFAFKSIICKCFCKRR 85


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = +3

Query: 237 YTAYCVCRSLPVIFYLLLGVYYFVCQTVWCILFCS*R 347
           +  YC     P I+ L    + F  +++ C  FC  R
Sbjct: 497 WLGYCNSAINPCIYALFSKDFRFAFKSIICKCFCKRR 533


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,811
Number of Sequences: 438
Number of extensions: 3671
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)