Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15a11
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    35   0.008
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi...    27   2.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   5.0  
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    26   5.0  
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo...    25   6.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   8.7  
SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces pomb...    25   8.7  
SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase |Schizosacc...    25   8.7  

>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 35.1 bits (77), Expect = 0.008
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +2

Query: 299  VSLPSLIGKPPPESRKPRAPAFTFGQKLDPLANIAKAGPGPASYNTEGMTAK 454
            V L S+   PP  +   + P  +  +K+DPL +I +A P P +    G T+K
Sbjct: 1935 VPLSSMPNAPPSVASNAKLPPASNNRKVDPLEDILQAMPPPTTRKARGKTSK 1986


>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
           Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +1

Query: 289 TSRSISPFPYR*TASRIEETKSSSFYFR 372
           T+ SI PFP    +S  +E KSS+F FR
Sbjct: 182 TTLSILPFPVNHGSSFGQELKSSAFLFR 209


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
 Frame = +2

Query: 212 PMGVRQNPWTPTKRRGPIAAEASSPGPAVVSLPSLIGKPPP-ESRKPRAPAFTFGQ 376
           PMG    P  P     PIA    +  PA   LP     PPP  +  P AP  +  +
Sbjct: 440 PMGAPAAP--PLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIAE 493


>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 18/79 (22%), Positives = 37/79 (46%)
 Frame = +2

Query: 200 SCETPMGVRQNPWTPTKRRGPIAAEASSPGPAVVSLPSLIGKPPPESRKPRAPAFTFGQK 379
           S E    ++ NP + +K +   +   +  GP ++S P +I    P  +  +  +    +K
Sbjct: 241 SSEMDSNLQTNPSSISKGKKNNSNNTTQKGPNIISSPQVINASSPVRKAGKKKS----KK 296

Query: 380 LDPLANIAKAGPGPASYNT 436
             P + ++ + P  ASYN+
Sbjct: 297 ALPTSPLSSSSP-DASYNS 314


>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
           Aif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = -3

Query: 233 GSGERPSESHTKLI 192
           GS E+P+ES+TKLI
Sbjct: 246 GSDEKPTESYTKLI 259


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 27/102 (26%), Positives = 43/102 (42%)
 Frame = +2

Query: 290  PAVVSLPSLIGKPPPESRKPRAPAFTFGQKLDPLANIAKAGPGPASYNTEGMTAKGRALG 469
            P    +PS+  +PP       AP+ T        A++    P PA    +  +A   +  
Sbjct: 1493 PVPSMIPSVAQQPPSSVAPATAPSSTLPPSQSSFAHV----PSPAPPAPQHPSAAALSSA 1548

Query: 470  PAASLHGRWPPPRVEPTPAPCDYEPNKAARAVLDHAPAFSIG 595
            PA +      P R  P  AP   EP +  +A+ + APA ++G
Sbjct: 1549 PADNS----MPHRSSPY-AP--QEPVQKPQAINNIAPATNLG 1583


>SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
 Frame = +2

Query: 209 TPMGVRQNPWTPTKRRGPIAAEASSPGPAVVSLPSLI--GKPPPESRKPRAPAFTFGQKL 382
           TP+  R        +R P+ +   S  P+ V++P  +  GK    S+   AP+    +K+
Sbjct: 18  TPISNRNGTKGAGSKRAPLGSTKQSNAPSSVTVPRTVLGGKSTNISKFISAPS---TKKM 74

Query: 383 DPLANIAKAGPGPASYNTEGMT 448
            P+ +I+   P     N++G++
Sbjct: 75  SPM-DISMDSPTILEPNSQGIS 95


>SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +1

Query: 397 YSKGWTWTCFLQYRRNDC*RACVRT-SCFVAWSMAPSSSGADTRAL 531
           Y   WT T   +  R     AC      +VAW M    SGAD+ A+
Sbjct: 139 YDLPWTPTQLSRIARQGSGSACRSLFGGYVAWEMGELHSGADSVAV 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,423,281
Number of Sequences: 5004
Number of extensions: 51504
Number of successful extensions: 170
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)