Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte15a09
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_1043 + 10565632-10565676,10565755-10565826,10566186-105662... 71 1e-12
07_03_1436 - 26543846-26546806 34 0.12
02_03_0080 + 14935664-14935796,14943858-14944175,14944352-149451... 34 0.12
10_08_1024 + 22371260-22371481,22371514-22372188,22372291-223732... 33 0.29
04_03_0069 - 10665455-10666902,10669889-10670138 33 0.29
01_05_0256 - 19994072-19995268 32 0.38
09_04_0695 - 19547101-19548010,19548089-19548587,19549461-195497... 30 1.5
01_06_0430 + 29299970-29300031,29300162-29300294,29301057-293011... 30 1.5
10_03_0002 - 6858257-6861205 29 2.7
05_04_0037 - 17399402-17400934 29 2.7
03_05_0024 - 19934529-19935298,19935359-19935871,19936147-199366... 28 8.2
>08_01_1043 +
10565632-10565676,10565755-10565826,10566186-10566289,
10566482-10566574,10571044-10571183,10571297-10571427
Length = 194
Score = 70.5 bits (165), Expect = 1e-12
Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 3/158 (1%)
Frame = +2
Query: 179 LDPSAADVDLKAGCSVEIPLWLAESLYSRRPPLVSVELPKIYKESYREILNADACAVDLH 358
LDP A ++ G V++P WLA L S VS+ +P + + R+ + ADA VDL
Sbjct: 31 LDPGAERNSVEKGAKVDLPFWLAHGLLSLEQA-VSINVPPCFTQKTRKEIQADAACVDLR 89
Query: 359 KLGQHFYELGCYVAKHDIKSEVAATLNNTYRQRFRMLLAASMSSD--SINTMQPLSASER 532
+FYELGC + + L + R++ +L+ S SS ++ P E
Sbjct: 90 IRCPYFYELGCKIVPLVNDRSIGLFLRYAFTSRYKEILSKSHSSSMMTVPKFVPRLTKEE 149
Query: 533 IQAAD-ASNTERSFLTWLQRGDTPLTTANMVANHRKRK 643
Q + A ++ +F W + G L A+++ RK K
Sbjct: 150 AQVFESARDSMTAFKKW-RAGGVRLQKASILGRKRKTK 186
>07_03_1436 - 26543846-26546806
Length = 986
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +2
Query: 521 ASERIQAADA-SNTERSFLTWLQRGDTPLTTANMVANHRKRKRAEMEML*T 670
A+E +A DA + +++S TW + DTP T + NH+ RKR E++ T
Sbjct: 592 ANEYAKAEDAITASKQSGTTWKPKKDTPTTGGSGSNNHKDRKRKPEELVAT 642
>02_03_0080 +
14935664-14935796,14943858-14944175,14944352-14945199,
14945249-14945521
Length = 523
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +2
Query: 521 ASERIQAADA-SNTERSFLTWLQRGDTPLTTANMVANHRKRKRAEMEML*T 670
AS+ QA D + +++S TW + DTP T + NH+ RKR E++ T
Sbjct: 151 ASQDGQAEDVITASKQSGTTWKPKKDTPTTGGSGSTNHKDRKRKPKELVAT 201
>10_08_1024 +
22371260-22371481,22371514-22372188,22372291-22373236,
22389377-22389552
Length = 672
Score = 32.7 bits (71), Expect = 0.29
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +2
Query: 521 ASERIQAADA-SNTERSFLTWLQRGDTPLTTANMVANHRKRKRAEMEML*T 670
A+E +A DA + +++S TW + DTP + NH+ RKR E++ T
Sbjct: 376 ANEYTKAEDAITASKQSGTTWKPKNDTPTAGGSGSNNHKDRKRKPEELVAT 426
>04_03_0069 - 10665455-10666902,10669889-10670138
Length = 565
Score = 32.7 bits (71), Expect = 0.29
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +2
Query: 521 ASERIQAADA-SNTERSFLTWLQRGDTPLTTANMVANHRKRKRAEMEML*T 670
A+E +A DA + +++S TW + DTP + NH+ RKR E++ T
Sbjct: 171 ANEYAKAEDAITASKQSGTTWKPKKDTPAVGGSRSNNHKDRKRKPEELVAT 221
>01_05_0256 - 19994072-19995268
Length = 398
Score = 32.3 bits (70), Expect = 0.38
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 521 ASERIQAADA-SNTERSFLTWLQRGDTPLTTANMVANHRKRKRAEMEML*TFEH 679
A+E +A DA + +++S +W + DTP T NH+ RKR E++ T H
Sbjct: 5 ANEYAKAEDAVTASKQSGPSWKPKKDTPATGGGGSNNHKDRKRKPEELVATAIH 58
>09_04_0695 -
19547101-19548010,19548089-19548587,19549461-19549728,
19551025-19551687,19551849-19552060,19552203-19552593,
19552659-19553107,19553454-19553790
Length = 1242
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 542 ADASNTERSFLTWLQRGDTPLTTANMVANHRKRK 643
A + +RS LTWL+ GD ++ AN R+RK
Sbjct: 721 AKSKKRQRSRLTWLKEGDANTKFFHIHANSRRRK 754
>01_06_0430 +
29299970-29300031,29300162-29300294,29301057-29301160,
29302201-29302372,29302488-29302628,29302707-29303055,
29303133-29305477
Length = 1101
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -2
Query: 288 STLTRGGLLEYKDSASHSGISTLQPAFRSTSAAEGSKNHFT 166
ST G + SAS+SG+ T QPA S S E S +H +
Sbjct: 208 STYPGGNIPTRGSSASNSGMPTSQPAAPSHSYMESSNSHMS 248
>10_03_0002 - 6858257-6861205
Length = 982
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 521 ASERIQAADA-SNTERSFLTWLQRGDTPLTTANMVANHRKRKRAEMEML*TFEH 679
A+E +A DA + +++S +W TP T NH+ RKR E++ T H
Sbjct: 589 ANEYAKAEDAVTASKQSGPSWKPNKGTPATGGGGSNNHKDRKRKPEELVATATH 642
>05_04_0037 - 17399402-17400934
Length = 510
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 521 ASERIQAADA-SNTERSFLTWLQRGDTPLTTANMVANHRKRKRAEMEML*TFEH 679
A+E +A DA + +++S +W TP T NH+ RKR E++ T H
Sbjct: 117 ANEYAKAEDAVTASKQSGPSWKPNKGTPATGGGGSNNHKDRKRKPEELVATATH 170
>03_05_0024 -
19934529-19935298,19935359-19935871,19936147-19936635,
19936738-19937044,19937104-19937130
Length = 701
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 521 ASERIQAADASNT-ERSFLTWLQRGDTPLTTANMVANHRKRKRAEMEML 664
A++ +A DA N ++S W + DTP + NH+ RKR +++
Sbjct: 327 ANDYAKADDAVNAYKQSSGNWKSKKDTPAAGGSGSNNHKDRKRKPEDLV 375
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,644,563
Number of Sequences: 37544
Number of extensions: 311699
Number of successful extensions: 629
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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