Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15a09
         (700 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC014437-1|AAH14437.1|  216|Homo sapiens GINS complex subunit 3 ...   101   3e-21
BC005879-1|AAH05879.1|  216|Homo sapiens GINS complex subunit 3 ...   101   3e-21
CR457283-1|CAG33564.1|  138|Homo sapiens FLJ13912 protein.             36   0.18 
AK023974-1|BAB14747.1|  138|Homo sapiens protein ( Homo sapiens ...    36   0.18 

>BC014437-1|AAH14437.1|  216|Homo sapiens GINS complex subunit 3
           (Psf3 homolog) protein.
          Length = 216

 Score =  101 bits (241), Expect = 3e-21
 Identities = 58/169 (34%), Positives = 95/169 (56%), Gaps = 8/169 (4%)
 Frame = +2

Query: 176 FLDPSA-ADVD--LKAGCSVEIPLWLAESLYSRRPPLVSVELPKIYKESYREILNADACA 346
           FL+ SA A+ D  +  G  +E+PLWLA+ L+  +  ++SVELPKIY+E +R + +AD   
Sbjct: 47  FLERSAGAETDNAVPQGSKLELPLWLAKGLFDNKRRILSVELPKIYQEGWRTVFSADPNV 106

Query: 347 VDLHKLGQHFYELGCYVAKHDI--KSEVAATLNNTYRQRFRMLLAASMSS---DSINTMQ 511
           VDLHK+G HFY  G  +   D    ++++ +L  T+  RFR ++ +S ++   D+   + 
Sbjct: 107 VDLHKMGPHFYGFGSQLLHFDSPENADISQSLLQTFIGRFRRIMDSSQNAYNEDTSALVA 166

Query: 512 PLSASERIQAADASNTERSFLTWLQRGDTPLTTANMVANHRKRKRAEME 658
            L   ER            F  W +   + +T +N+V N++KRK  +ME
Sbjct: 167 RLDEMERGLFQTGQKGLNDFQCWEKGQASQITASNLVQNYKKRKFTDME 215


>BC005879-1|AAH05879.1|  216|Homo sapiens GINS complex subunit 3
           (Psf3 homolog) protein.
          Length = 216

 Score =  101 bits (241), Expect = 3e-21
 Identities = 58/169 (34%), Positives = 95/169 (56%), Gaps = 8/169 (4%)
 Frame = +2

Query: 176 FLDPSA-ADVD--LKAGCSVEIPLWLAESLYSRRPPLVSVELPKIYKESYREILNADACA 346
           FL+ SA A+ D  +  G  +E+PLWLA+ L+  +  ++SVELPKIY+E +R + +AD   
Sbjct: 47  FLERSAGAETDNAVPQGSKLELPLWLAKGLFDNKRRILSVELPKIYQEGWRTVFSADPNV 106

Query: 347 VDLHKLGQHFYELGCYVAKHDI--KSEVAATLNNTYRQRFRMLLAASMSS---DSINTMQ 511
           VDLHK+G HFY  G  +   D    ++++ +L  T+  RFR ++ +S ++   D+   + 
Sbjct: 107 VDLHKMGPHFYGFGSQLLHFDSPENADISQSLLQTFIGRFRRIMDSSQNAYNEDTSALVA 166

Query: 512 PLSASERIQAADASNTERSFLTWLQRGDTPLTTANMVANHRKRKRAEME 658
            L   ER            F  W +   + +T +N+V N++KRK  +ME
Sbjct: 167 RLDEMERGLFQTGQKGLNDFQCWEKGQASQITASNLVQNYKKRKFTDME 215


>CR457283-1|CAG33564.1|  138|Homo sapiens FLJ13912 protein.
          Length = 138

 Score = 35.5 bits (78), Expect = 0.18
 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
 Frame = +2

Query: 383 LGCYVAKHDIKSEVAATLNNTYRQRFRMLLAASMSS---DSINTMQPLSASERIQAADAS 553
           LG +  +    +E    +  T+  RFR ++ +S ++   D+   +  L   ER       
Sbjct: 43  LGAFFLERSAGAETDNAVPQTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQ 102

Query: 554 NTERSFLTWLQRGDTPLTTANMVANHRKRKRAEME 658
                F  W +   + +T +N+V N++KRK  +ME
Sbjct: 103 KGLNDFQCWEKGQASQITASNLVQNYKKRKFTDME 137


>AK023974-1|BAB14747.1|  138|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13912 fis, clone Y79AA1000230. ).
          Length = 138

 Score = 35.5 bits (78), Expect = 0.18
 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
 Frame = +2

Query: 383 LGCYVAKHDIKSEVAATLNNTYRQRFRMLLAASMSS---DSINTMQPLSASERIQAADAS 553
           LG +  +    +E    +  T+  RFR ++ +S ++   D+   +  L   ER       
Sbjct: 43  LGAFFLERSAGAETDNAVPQTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQ 102

Query: 554 NTERSFLTWLQRGDTPLTTANMVANHRKRKRAEME 658
                F  W +   + +T +N+V N++KRK  +ME
Sbjct: 103 KGLNDFQCWEKGQASQITASNLVQNYKKRKFTDME 137


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,872,440
Number of Sequences: 237096
Number of extensions: 1770756
Number of successful extensions: 2934
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2932
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)