Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15a09
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           22   4.9  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   6.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   8.5  

>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 311 SYREILNADACAVDLHKLGQ 370
           S++  +N  ACA + H LG+
Sbjct: 25  SFKGQVNDSACAANCHSLGK 44


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 566 ISQY*KHLQLVFSH*QKVVALCLLSHSTYWQPITF 462
           ++QY K  +L FS  ++V+ L        W P TF
Sbjct: 88  LNQYWKDERLAFSQEEEVLTLSGDFAEKIWVPDTF 122


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 291 NSTLTRGGLLEYKDSASHSGISTLQPAFRSTSA 193
           N ++TR GL   +DS+   G +     FR   A
Sbjct: 337 NPSITRTGLSSVRDSSIICGGNKRSQVFRGRDA 369


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,769
Number of Sequences: 438
Number of extensions: 3520
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)