Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15a08
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    30   0.34 
SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.45 
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    28   1.4  
SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces...    26   4.2  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    26   5.5  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   9.6  
SPBC215.14c |vps20||vacuolar sorting protein Vps20|Schizosacchar...    25   9.6  

>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 228 QTTSGFKFRNILIFFKQLSKFDCHYNILHNF 136
           +T + +  R   IF K  +K  CH+NIL  F
Sbjct: 129 ETRANYPVRGFDIFMKHATKHSCHFNILKCF 159


>SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -2

Query: 589 HPRRHYNHVYSAPSSLHIRLS 527
           HP  HY     +PSSLHIRLS
Sbjct: 16  HPALHYATYRVSPSSLHIRLS 36


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +3

Query: 234  KEDVIELMIHQLNLIQCKNMICMKMK*HLKTQMMKRMTSKL*CWII 371
            +E +++ + HQL L Q +++IC K K  +K   +K   S    W++
Sbjct: 2117 EETLVDNLYHQLTLYQLQDLICSKCK-TVKQWSLKERCSCSGEWVL 2161


>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 333

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 346 VILFIIWVFKCYFIFIQIMF 287
           VI++++WV  CY +F++  F
Sbjct: 176 VIIWLLWVVICYTLFLRAKF 195


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -2

Query: 370 IIQHYNFEVILFIIWVFKCYFIFIQIM 290
           +I   NF  + F++W+  C F  I ++
Sbjct: 561 VISELNFSFLFFLLWLLICAFGLIGVL 587


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2

Query: 487 WNFYVRFCVSFNSAYNS 437
           W+F++ F + +N AY+S
Sbjct: 476 WSFFILFNICYNKAYSS 492


>SPBC215.14c |vps20||vacuolar sorting protein
           Vps20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 226

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = +2

Query: 131 NVKLCSIL*WQSNLDNCLKKIKMLRNLKPEVVWIEGRCYRANDSPAEFNSMQEHDLYENE 310
           N K  SIL  +   D  L+  K L  ++   + I  +C R +D      +++   LY   
Sbjct: 9   NDKDRSILSIKEQRDKLLRYSKRLEKIEQLEIDIARKCLRDSDKRGALRALKAKKLYSGL 68

Query: 311 IT 316
           IT
Sbjct: 69  IT 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,223,662
Number of Sequences: 5004
Number of extensions: 39861
Number of successful extensions: 99
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)