Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15a08
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0139 - 2074193-2077146,2077549-2078043,2078983-2079190           29   4.3  
03_05_0887 - 28527602-28530555,28531296-28531790,28532377-28532584     29   4.3  
03_05_0886 - 28516210-28519163,28519577-28520071,28520757-28520964     29   4.3  
03_04_0075 + 17066321-17066381,17066476-17067534,17067641-17067927     27   9.9  

>09_01_0139 - 2074193-2077146,2077549-2078043,2078983-2079190
          Length = 1218

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = -2

Query: 610 KMRRCLFHPRRHYNHVYSAPSSLHIRLSWS*NDNVPSLIVFWNFYVRFCVSFNSAYN 440
           K  RCLF    H +++ +     H    W  + +    I  WN+  R CV+  + +N
Sbjct: 81  KTHRCLFTLHGHLDYIRTV--QFHHEYPWIVSASDDQTIRIWNWQSRTCVAVLTGHN 135


>03_05_0887 - 28527602-28530555,28531296-28531790,28532377-28532584
          Length = 1218

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = -2

Query: 610 KMRRCLFHPRRHYNHVYSAPSSLHIRLSWS*NDNVPSLIVFWNFYVRFCVSFNSAYN 440
           K  RCLF    H +++ +     H    W  + +    I  WN+  R CV+  + +N
Sbjct: 81  KTHRCLFTLHGHLDYIRTV--QFHHECPWIVSASDDQTIRIWNWQSRTCVAVLTGHN 135


>03_05_0886 - 28516210-28519163,28519577-28520071,28520757-28520964
          Length = 1218

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = -2

Query: 610 KMRRCLFHPRRHYNHVYSAPSSLHIRLSWS*NDNVPSLIVFWNFYVRFCVSFNSAYN 440
           K  RCLF    H +++ +     H    W  + +    I  WN+  R CV+  + +N
Sbjct: 81  KTHRCLFTLHGHLDYIRTV--QFHHEYPWIVSASDDQTIRIWNWQSRTCVAVLTGHN 135


>03_04_0075 + 17066321-17066381,17066476-17067534,17067641-17067927
          Length = 468

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 478 YVRFCVSFNSAYNSTFLP 425
           Y   CVSF+S YNST +P
Sbjct: 216 YPTCCVSFSSFYNSTIVP 233


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,772,761
Number of Sequences: 37544
Number of extensions: 211138
Number of successful extensions: 393
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)