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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15a04
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    31   0.15 
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    31   0.15 
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei...    30   0.36 
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      29   0.47 
SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyce...    29   0.82 
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    29   0.82 
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    29   0.82 
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.1  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    28   1.1  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    28   1.4  
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    28   1.4  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    28   1.4  
SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p...    28   1.4  
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch...    27   1.9  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    27   2.5  
SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosacchar...    27   3.3  
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    27   3.3  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    26   4.4  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    26   5.8  
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom...    26   5.8  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    26   5.8  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    25   7.7  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    25   7.7  
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    25   7.7  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   7.7  

>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
 Frame = +1

Query: 1    KKLDALKLQYDNNIKNIKKEHDNGVNNLQNLHEETLH--DIIKIRENEIENLRTLSIEAM 174
            K+L+A   +  NNIK++ KE +N     QNL + +L   ++ +I EN +  +  L     
Sbjct: 1113 KELEAKVKECLNNIKSLTKELENKEEKCQNLSDASLKYIELQEIHENLLLKVSDLE-NYK 1171

Query: 175  KKADKLEKDNSLLK 216
            KK + L+ D   LK
Sbjct: 1172 KKYEGLQLDLEGLK 1185



 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +1

Query: 121  KIRENEIENLRTLSIEAMKKADKLEKDNSLL 213
            K+ E  I+   +LS E++K+  KLE++NS L
Sbjct: 1017 KMNEKSIQQEGSLS-ESLKRVKKLERENSTL 1046


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 25/106 (23%), Positives = 47/106 (44%)
 Frame = +1

Query: 10  DALKLQYDNNIKNIKKEHDNGVNNLQNLHEETLHDIIKIRENEIENLRTLSIEAMKKADK 189
           ++LK +   +   ++ E D+ + +   L +E       + E+E E  R  S    K+   
Sbjct: 424 ESLKSRLLQSRTQMQTELDSYITSNSQLKDEITSLKQTVSESEAERKRLFSSAQEKQLQM 483

Query: 190 LEKDNSLLKHQEQYNGLACFDEDQEVPSESNSQKNTRLQRKVLTQT 327
            E  N L   QEQ N      ++QE   ++  ++ T L++ +  QT
Sbjct: 484 KETVNKLTSLQEQNNEFDRQLKEQEEDLQNKEEELTELRKLLREQT 529


>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
           Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 44/209 (21%), Positives = 84/209 (40%), Gaps = 3/209 (1%)
 Frame = +1

Query: 58  EHDNGVNNLQNLHEETLHDIIKIRENEIENLRTLSIEAMKKADKLEKDNSLLKHQEQYNG 237
           E +  +NN + L  ETL +  ++ E E   L+  +    +K+ KLE++ + LK  ++ N 
Sbjct: 88  EQERDLNN-EKLASETLREKTQLLEKENGALKVENGYLYEKSRKLEEEMAHLK--KKCNV 144

Query: 238 LACFDEDQEVPSESNSQKNTRLQRKVLTQTNVEAFDVKPKTRIHGPCTCSLDVNMSDTIR 417
                E+  +  +S    NT+L+  + T       + K   +I  P   S         +
Sbjct: 145 YKSKFEESSLRCKSLYSSNTKLKDSMETMKRRMETETKEMNKIK-PKNDSESDRFKRNSQ 203

Query: 418 NIFQQ---VDNDQRKLAERTYLKYILNKILNDSVKSLDAQELSFLHLKICRTWKMKLNKE 588
           ++ QQ   +D      +    +  I N       K     E+     ++ +T+    N+ 
Sbjct: 204 SLSQQSPLLDVHSPDNSNHRTMLNINNSSPIKPKKIFKPNEVKNRISRLQKTFADLENQH 263

Query: 589 EAFQMKINTLESELLTKQKHTQQHIADLD 675
            +FQ    TL   L      T+Q ++ L+
Sbjct: 264 HSFQQICQTLRKRLENDSSTTKQRLSKLE 292


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
 Frame = +1

Query: 1   KKLDALKLQYDNNIKNIKKEHDNGVNNLQNLHEETLHDIIKIRENEIENLRTLSIEAMKK 180
           K+ +A     ++   +IK++ D     L+ L +E  +   K   +E E     +IE MKK
Sbjct: 101 KQSEANNAALESLNNSIKQKQDEYQRKLEELKKEIEYAKTKSLFHEREAQD--AIETMKK 158

Query: 181 ADKLEKDNSLLK--HQEQYNGLACFDEDQEVPSESNSQKNTRLQRK 312
             +  K++ ++K  H+E  +       DQ   S  ++ KN+  ++K
Sbjct: 159 MKRDVKNSPIMKKSHEEDGDNKLLSSSDQLAKSTKHAAKNSPSKKK 204


>SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 331 VEAFDVKPKTRIHGPCTCSLDVNMSDTIRNIFQQVDNDQRKL 456
           + A D++P   I G CT  LD+   +T+  I     N+   L
Sbjct: 79  IVAVDLQPMAPIDGVCTLQLDITHPNTLSIILSHFGNEPADL 120


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
 Frame = +1

Query: 388 LDVNMSDTIRNIFQQVDNDQRKLAERTYLKYILNKILN---DSVKSLDAQELSFLHLKIC 558
           L V + DT++NIF+ V        E  Y K +   IL    +S+K+     L   + K+C
Sbjct: 726 LKVPVPDTVKNIFEAVRKCTFDTLEEEYEKTVATDILRNFAESIKTCGPVVLGDDYEKLC 785

Query: 559 RTWKMKLNKEEAFQ 600
                 L K+   Q
Sbjct: 786 EVVMEVLQKQHIVQ 799


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 17/94 (18%), Positives = 40/94 (42%)
 Frame = +1

Query: 34  NNIKNIKKEHDNGVNNLQNLHEETLHDIIKIRENEIENLRTLSIEAMKKADKLEKDNSLL 213
           +N++N + + ++      N   E     + + E+        ++     +D  EK+N+ +
Sbjct: 498 SNVRNDESKANSLSEISYNQQSECRSSELNVNEDSANQKEESALGTSDNSDMYEKENTPI 557

Query: 214 KHQEQYNGLACFDEDQEVPSESNSQKNTRLQRKV 315
            H E  N L+       +  E+  +K ++L+  V
Sbjct: 558 HHNESLNQLSKDLGSISLSEETKQEKPSKLKETV 591



 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = +1

Query: 484 LNKILNDSVKSLDAQELSFLHLKICRTWKMKLNKEEAFQMKINTL 618
           ++ + ND  K+    E+S+     CR+ ++ +N++ A Q + + L
Sbjct: 497 VSNVRNDESKANSLSEISYNQQSECRSSELNVNEDSANQKEESAL 541


>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 14/70 (20%)
 Frame = +1

Query: 478 YILNKILNDS--VKSLDAQELSFLHLK--ICRTWKMKLNKEEAFQM----------KINT 615
           +++NK + +S  V+ L+A     LH K  IC+  K  L K+ A+QM          K+++
Sbjct: 9   FLINKSICESKEVEPLEANLFGKLHNKLLICKAKKENLEKKLAYQMMYSKLLKSLPKLSS 68

Query: 616 LESELLTKQK 645
           LE   LTK K
Sbjct: 69  LEENKLTKLK 78


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 21/74 (28%), Positives = 34/74 (45%)
 Frame = +1

Query: 7   LDALKLQYDNNIKNIKKEHDNGVNNLQNLHEETLHDIIKIRENEIENLRTLSIEAMKKAD 186
           L+    Q    I+  KK+  + +N L  L  +     I  +ENE+  +       + +AD
Sbjct: 305 LELQSSQLSRQIEFSKKDESSKLNILSELESK-----ISEKENELSEILPKYNAIVSEAD 359

Query: 187 KLEKDNSLLKHQEQ 228
            L K   LLK+Q+Q
Sbjct: 360 DLNKRIMLLKNQKQ 373


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1147

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 27/110 (24%), Positives = 45/110 (40%)
 Frame = +1

Query: 10   DALKLQYDNNIKNIKKEHDNGVNNLQNLHEETLHDIIKIRENEIENLRTLSIEAMKKADK 189
            + +    + N+K    +  NG ++ +N   E LHD I+I   ++E       E +  A K
Sbjct: 854  ETVSADINQNLKETLDKLLNGSSDFKNNEIELLHDQIRITNAKLEKR-----EKLINASK 908

Query: 190  LEKDNSLLKHQEQYNGLACFDEDQEVPSESNSQKNTRLQRKVLTQTNVEA 339
              +D    + QE    ++  +       E NS    +L  K L Q N  A
Sbjct: 909  YIEDTLRSEIQEAAEKVSNLEFSNFNLKEENSNMQLQLM-KALEQRNTGA 957


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 184 DKLEKDNSLLKHQEQYNGLACFDEDQEVPSESNSQKNTRLQRK 312
           +K ++D+S L H+E  N +   +ED E    S S    R Q+K
Sbjct: 653 NKQKRDSSKLNHKEPSNPIEERNEDIEPSEASTSVSKKRKQKK 695


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 9/110 (8%)
 Frame = +1

Query: 7   LDALKLQYDNNIKNIKKEHDNGVNNLQNLHEETLHDIIKIRENEIENL-------RTLSI 165
           LDA K  Y+   K  +K   NGV N      + L    K R N  + L       R L  
Sbjct: 503 LDAYKDVYEKQRKAEQKAKSNGVMN--GNQRQFLGFTFKYRPNARKPLVGRHREKRQLRK 560

Query: 166 EAMKKADKLEKDNSLL--KHQEQYNGLACFDEDQEVPSESNSQKNTRLQR 309
           E  +K +   K   L+   H +    +   DED+   ++ +  K++R+ R
Sbjct: 561 EKPEKKNNSTKQKDLITVSHNKGTTAIEDLDEDKRSKTKGHKTKSSRVHR 610


>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +1

Query: 73  VNNLQNLHEETLHDIIKIRENEIENLRTLSIEAMKKADK----LEKDNSLLKHQEQ 228
           VN+++++    L + IK  E+E+E L       +KK  K     EK +S+ K + Q
Sbjct: 171 VNSIEHIIIPRLENTIKYIESELEELEREDFTRLKKVQKTKENAEKADSVTKEEHQ 226


>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +1

Query: 151 RTLSIEAMKKADKLEKDNSLLKHQEQYNGLACFDEDQEVPSESNSQKNTRLQRKVLTQTN 330
           ++L +    K D++ KDN +  HQ       CF ++ E+   SN  K   L R +   T+
Sbjct: 241 QSLQVNIDNKVDEILKDNIVSYHQPSGTLSLCFSKN-ELKKHSNLTKEELLLRCLTLTTS 299


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +1

Query: 526 QELSFLHLKICRTWKMKLNKEEAFQMKINTLESELL 633
           +EL +  ++I   W+MKL K +  ++KI + ++  L
Sbjct: 886 KELQYYAVRIQSLWRMKLAKRQLTELKIESTKASHL 921


>SPAC21E11.03c |pcr1|mts2|transcription factor
           Pcr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +1

Query: 253 EDQEVPSESNSQKNTRLQRKVLTQTNVEAFDVKPKTRIHGPCTCSLDV 396
           ++ E  + +  +++ RLQ  +L+Q   EAF +K +   H  C CS+ +
Sbjct: 36  KELEQTANAAFEQSKRLQL-LLSQLQQEAFRLKSQLLAHQGCQCSVKI 82


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 8/36 (22%), Positives = 23/36 (63%)
 Frame = +2

Query: 263 RFLQNPIVKKTHDFNEKFSRRLMSKRLT*SQKHVYM 370
           R +Q P+ ++T D+    S+ ++++ L  ++ H+++
Sbjct: 8   RIIQKPMTRRTVDYGSGLSKYIVNRHLRSNRYHIHV 43


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
 Frame = +1

Query: 52  KKEHDNGVN--NLQNLHEETLHDIIKIRENEIENLRTLSIEAMKKADKLEKDN-SLLKHQ 222
           +K+H+  +   + +   E+   DI++ +EN    L   +I+  +  ++LE  N S  K +
Sbjct: 193 EKDHEYSLQLQSYREAAEKAKQDILETKENLSSELSISNIQLKEAKERLEAANASYQKLR 252

Query: 223 EQYNGLACFDE 255
            ++  LA + E
Sbjct: 253 REHKELALYHE 263


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
            Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/72 (19%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = +1

Query: 412  IRNIFQQVDNDQRKLAERTYLKYILNKILN--DSVKSLDAQELSFLHLKICRTWKMKLNK 585
            +  +  + +  Q   ++  +++++ N+++N  D    +DA   SF ++  C++ K KL  
Sbjct: 878  VEGLIPRGETVQYAFSDPEHMEFV-NQVINEIDRYMRIDACMPSFKNIITCKSLKAKLRL 936

Query: 586  EEAFQMKINTLE 621
             + F ++    E
Sbjct: 937  AQTFHLEFGPKE 948


>SPBC2F12.13 |klp5|sot1|kinesin-like protein
           Klp5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 883

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = +1

Query: 22  LQYDNNIKNIKKEHDNGVNNLQNLHEETLHDIIKIRE--NEIENLRTLSIEAMKKADKLE 195
           L+Y N  KNIK E    + ++     + +  I+++RE  +E+EN R   I+   +++  +
Sbjct: 381 LKYANRAKNIKTEVLRNMISVDRHVSQYVKAIVELREQISELEN-RLAQIDLSSQSNGSD 439

Query: 196 KD 201
           +D
Sbjct: 440 QD 441


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 1   KKLDALKLQYDNNIKNIKKEHDNGVNNLQNLHE 99
           K  D+ +  ++++  N+KK  ++G  N  N HE
Sbjct: 257 KSSDSSETSHESSNSNLKKSSESGSTNHHNNHE 289


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 286 DYWILKEPPDPRR 248
           DYWI ++PP P R
Sbjct: 281 DYWIKEDPPKPAR 293


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 67  NGVNNLQNLHEETLH-DIIKIRENEIENLRTLSIEAMKKADKLEKDNS 207
           N V + QN+ E+  + D+IK+ E E+  L+     +    D ++KD S
Sbjct: 451 NSVKSSQNMKEKGFYSDVIKLHE-EVSLLKVNVENSQNAKDTIQKDIS 497


>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +1

Query: 565 WKMKLNKEEA-FQMKINTLESELLTKQKHTQQHIADLDRK 681
           +K+KL  EE+ +++++  LES+L T+ +  +      +RK
Sbjct: 198 FKIKLETEESNWKVRLQVLESKLATQDRKLRMQKKSTERK 237


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +1

Query: 94  HEETLHDIIKIRENEIENLRTLSIEAMKKADKLEKD--NSLLKHQEQYNGL 240
           H E+  DII    N++++  T++ E+ +  +KL  +    + + QE Y  L
Sbjct: 272 HLESQSDIINTTINDLKSQMTITDESSEDLEKLHSNFAEKVKEEQELYKSL 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.129    0.356 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,424,385
Number of Sequences: 5004
Number of extensions: 47709
Number of successful extensions: 182
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)

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