Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15a04
         (682 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    24   3.9  
AF291654-1|AAG00600.1| 1340|Anopheles gambiae thioester-containi...    24   5.1  
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    24   5.1  

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = +1

Query: 178 KADKLEKDNSLLKHQEQYNGLACFDEDQEVPSESNSQKNTRLQ 306
           KA+++EK+  + +  +QY+ L    E +E   +++  K  ++Q
Sbjct: 347 KAERVEKEKLVKEEIKQYDELVSAKESKESTLKNSLDKFAKVQ 389


>AF291654-1|AAG00600.1| 1340|Anopheles gambiae thioester-containing
            protein I protein.
          Length = 1340

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 62   TTMELIIYKIYTKRRCMILLKYAKMKL 142
            T++ L  YK+ T+R C  +  Y + K+
Sbjct: 1268 TSVVLYYYKMGTERNCFTVTAYRRFKV 1294


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 94  HEETLHDIIKIRENEIENLRTLSIEAMKKADKLE 195
           H+   H  I++ ++ + + RTL    M   D+LE
Sbjct: 688 HQRIQHGAIRVGDHVVHSSRTLKYLGMVLDDRLE 721


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.313    0.129    0.356 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 591,957
Number of Sequences: 2352
Number of extensions: 10902
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68577420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)